Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0872 and Dshi_0873 are separated by 170 nucleotides Dshi_0873 and Dshi_0874 are separated by 100 nucleotides Dshi_0874 and Dshi_0875 are separated by 27 nucleotides Dshi_0875 and Dshi_0876 are separated by 23 nucleotides
Dshi_0872: Dshi_0872 - extracellular solute-binding protein family 5 (RefSeq), at 888,387 to 889,970
_0872
Dshi_0873: Dshi_0873 - hypothetical protein (RefSeq), at 890,141 to 890,812
_0873
Dshi_0874: Dshi_0874 - extracellular solute-binding protein, family 5 (RefSeq), at 890,913 to 891,137
_0874
Dshi_0875: Dshi_0875 - transposase IS3/IS911 family protein (RefSeq), at 891,165 to 891,431
_0875
Dshi_0876: Dshi_0876 - Integrase catalytic region (RefSeq), at 891,455 to 892,276
_0876
Position (kb) 890
891 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 889.174 kb on + strand, within Dshi_0872 at 889.194 kb on + strand, within Dshi_0872 at 889.345 kb on + strand, within Dshi_0872 at 889.467 kb on + strand, within Dshi_0872 at 889.509 kb on - strand, within Dshi_0872 at 889.519 kb on - strand, within Dshi_0872 at 889.583 kb on + strand, within Dshi_0872 at 889.584 kb on - strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.595 kb on + strand, within Dshi_0872 at 889.637 kb on - strand, within Dshi_0872 at 889.652 kb on + strand, within Dshi_0872 at 889.652 kb on + strand, within Dshi_0872 at 889.660 kb on - strand, within Dshi_0872 at 889.670 kb on - strand, within Dshi_0872 at 889.859 kb on - strand at 889.881 kb on + strand at 889.881 kb on + strand at 889.889 kb on - strand at 889.889 kb on - strand at 889.889 kb on - strand at 889.889 kb on - strand at 889.889 kb on - strand at 889.889 kb on - strand at 889.894 kb on - strand at 889.900 kb on + strand at 889.900 kb on + strand at 889.906 kb on - strand at 889.906 kb on - strand at 889.916 kb on + strand at 889.918 kb on - strand at 889.923 kb on - strand at 889.923 kb on - strand at 889.924 kb on - strand at 889.924 kb on - strand at 889.925 kb on - strand at 889.946 kb on + strand at 889.954 kb on - strand at 889.964 kb on + strand at 889.964 kb on + strand at 889.972 kb on - strand at 889.972 kb on - strand at 889.973 kb on + strand at 889.973 kb on + strand at 889.991 kb on - strand at 889.995 kb on + strand at 889.998 kb on - strand at 890.000 kb on + strand at 890.000 kb on + strand at 890.016 kb on - strand at 890.023 kb on + strand at 890.023 kb on - strand at 890.023 kb on - strand at 890.043 kb on + strand at 890.084 kb on - strand at 890.086 kb on + strand at 890.123 kb on - strand at 890.130 kb on + strand at 890.141 kb on - strand at 890.141 kb on - strand at 890.141 kb on - strand at 890.186 kb on - strand at 890.196 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.202 kb on + strand at 890.205 kb on - strand at 890.205 kb on - strand at 890.205 kb on - strand at 890.205 kb on - strand at 890.209 kb on - strand, within Dshi_0873 at 890.218 kb on + strand, within Dshi_0873 at 890.220 kb on + strand, within Dshi_0873 at 890.228 kb on - strand, within Dshi_0873 at 890.234 kb on - strand, within Dshi_0873 at 890.234 kb on - strand, within Dshi_0873 at 890.236 kb on + strand, within Dshi_0873 at 890.236 kb on + strand, within Dshi_0873 at 890.267 kb on - strand, within Dshi_0873 at 890.298 kb on - strand, within Dshi_0873 at 890.308 kb on + strand, within Dshi_0873 at 890.324 kb on - strand, within Dshi_0873 at 890.331 kb on + strand, within Dshi_0873 at 890.331 kb on + strand, within Dshi_0873 at 890.331 kb on + strand, within Dshi_0873 at 890.339 kb on - strand, within Dshi_0873 at 890.339 kb on - strand, within Dshi_0873 at 890.347 kb on + strand, within Dshi_0873 at 890.350 kb on + strand, within Dshi_0873 at 890.355 kb on - strand, within Dshi_0873 at 890.358 kb on + strand, within Dshi_0873 at 890.359 kb on + strand, within Dshi_0873 at 890.359 kb on + strand, within Dshi_0873 at 890.400 kb on - strand, within Dshi_0873 at 890.402 kb on + strand, within Dshi_0873 at 890.404 kb on + strand, within Dshi_0873 at 890.409 kb on + strand, within Dshi_0873 at 890.410 kb on + strand, within Dshi_0873 at 890.410 kb on - strand, within Dshi_0873 at 890.412 kb on - strand, within Dshi_0873 at 890.418 kb on - strand, within Dshi_0873 at 890.418 kb on - strand, within Dshi_0873 at 890.425 kb on + strand, within Dshi_0873 at 890.425 kb on + strand, within Dshi_0873 at 890.426 kb on + strand, within Dshi_0873 at 890.426 kb on + strand, within Dshi_0873 at 890.426 kb on + strand, within Dshi_0873 at 890.433 kb on - strand, within Dshi_0873 at 890.433 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.444 kb on - strand, within Dshi_0873 at 890.456 kb on + strand, within Dshi_0873 at 890.459 kb on - strand, within Dshi_0873 at 890.468 kb on - strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.471 kb on - strand, within Dshi_0873 at 890.477 kb on + strand, within Dshi_0873 at 890.477 kb on - strand, within Dshi_0873 at 890.477 kb on - strand, within Dshi_0873 at 890.483 kb on + strand, within Dshi_0873 at 890.493 kb on + strand, within Dshi_0873 at 890.501 kb on - strand, within Dshi_0873 at 890.502 kb on + strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.547 kb on + strand, within Dshi_0873 at 890.577 kb on - strand, within Dshi_0873 at 890.580 kb on + strand, within Dshi_0873 at 890.580 kb on + strand, within Dshi_0873 at 890.583 kb on + strand, within Dshi_0873 at 890.583 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on - strand, within Dshi_0873 at 890.593 kb on + strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.597 kb on + strand, within Dshi_0873 at 890.601 kb on - strand, within Dshi_0873 at 890.601 kb on - strand, within Dshi_0873 at 890.602 kb on + strand, within Dshi_0873 at 890.602 kb on + strand, within Dshi_0873 at 890.605 kb on - strand, within Dshi_0873 at 890.605 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.616 kb on + strand, within Dshi_0873 at 890.624 kb on - strand, within Dshi_0873 at 890.628 kb on + strand, within Dshi_0873 at 890.636 kb on - strand, within Dshi_0873 at 890.647 kb on + strand, within Dshi_0873 at 890.647 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.655 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.658 kb on - strand, within Dshi_0873 at 890.659 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.683 kb on - strand, within Dshi_0873 at 890.683 kb on - strand, within Dshi_0873 at 890.713 kb on + strand, within Dshi_0873 at 890.723 kb on + strand, within Dshi_0873 at 890.744 kb on - strand, within Dshi_0873 at 890.744 kb on - strand, within Dshi_0873 at 890.768 kb on + strand at 890.768 kb on - strand at 890.813 kb on - strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.824 kb on - strand at 890.824 kb on - strand at 890.824 kb on - strand at 890.825 kb on - strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.835 kb on - strand at 890.841 kb on + strand at 890.945 kb on - strand, within Dshi_0874 at 890.946 kb on - strand at 890.968 kb on - strand, within Dshi_0874 at 890.995 kb on + strand, within Dshi_0874 at 891.003 kb on - strand, within Dshi_0874 at 891.003 kb on - strand, within Dshi_0874 at 891.008 kb on + strand, within Dshi_0874 at 891.010 kb on + strand, within Dshi_0874 at 891.022 kb on - strand, within Dshi_0874 at 891.025 kb on + strand, within Dshi_0874 at 891.031 kb on + strand, within Dshi_0874 at 891.039 kb on - strand, within Dshi_0874 at 891.039 kb on - strand, within Dshi_0874 at 891.042 kb on + strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.072 kb on + strand, within Dshi_0874 at 891.072 kb on + strand, within Dshi_0874 at 891.073 kb on + strand, within Dshi_0874 at 891.080 kb on - strand, within Dshi_0874 at 891.081 kb on - strand, within Dshi_0874 at 891.092 kb on + strand, within Dshi_0874 at 891.117 kb on - strand at 891.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 889,174 + Dshi_0872 0.50 -1.3 889,194 + Dshi_0872 0.51 -1.9 889,345 + Dshi_0872 0.60 -0.1 889,467 + Dshi_0872 0.68 +0.7 889,509 - Dshi_0872 0.71 -2.3 889,519 - Dshi_0872 0.71 -1.0 889,583 + Dshi_0872 0.76 -0.1 889,584 - Dshi_0872 0.76 -1.9 889,595 + Dshi_0872 0.76 -0.9 889,595 + Dshi_0872 0.76 -0.7 889,595 + Dshi_0872 0.76 -2.3 889,595 + Dshi_0872 0.76 -0.8 889,595 + Dshi_0872 0.76 +0.7 889,595 + Dshi_0872 0.76 -1.0 889,595 + Dshi_0872 0.76 +0.4 889,637 - Dshi_0872 0.79 +0.5 889,652 + Dshi_0872 0.80 +0.2 889,652 + Dshi_0872 0.80 -3.7 889,660 - Dshi_0872 0.80 -0.8 889,670 - Dshi_0872 0.81 +0.6 889,859 - +1.2 889,881 + +0.5 889,881 + +0.4 889,889 - -1.6 889,889 - +0.2 889,889 - -0.9 889,889 - -0.9 889,889 - -1.3 889,889 - +1.7 889,894 - -1.7 889,900 + -1.0 889,900 + +0.8 889,906 - -0.3 889,906 - -0.3 889,916 + -1.4 889,918 - -1.7 889,923 - -1.7 889,923 - -0.7 889,924 - +0.7 889,924 - -0.7 889,925 - -0.3 889,946 + -0.2 889,954 - -0.3 889,964 + -1.1 889,964 + +2.4 889,972 - -1.7 889,972 - -3.9 889,973 + -0.5 889,973 + +0.5 889,991 - +0.7 889,995 + -0.3 889,998 - -2.5 890,000 + -1.9 890,000 + +1.4 890,016 - +0.3 890,023 + +2.8 890,023 - +1.4 890,023 - -2.0 890,043 + -3.7 890,084 - -1.7 890,086 + -1.9 890,123 - -0.7 890,130 + -0.2 890,141 - -0.2 890,141 - -0.2 890,141 - +1.3 890,186 - +0.1 890,196 + -1.1 890,197 + -1.7 890,197 + -0.5 890,197 + +0.3 890,197 + +0.2 890,197 + +2.3 890,202 + +0.5 890,205 - +0.7 890,205 - +0.7 890,205 - -0.3 890,205 - -0.8 890,209 - Dshi_0873 0.10 -3.2 890,218 + Dshi_0873 0.11 +3.8 890,220 + Dshi_0873 0.12 -0.7 890,228 - Dshi_0873 0.13 +0.0 890,234 - Dshi_0873 0.14 +0.2 890,234 - Dshi_0873 0.14 +0.7 890,236 + Dshi_0873 0.14 -0.2 890,236 + Dshi_0873 0.14 +0.2 890,267 - Dshi_0873 0.19 +0.5 890,298 - Dshi_0873 0.23 +0.3 890,308 + Dshi_0873 0.25 -0.9 890,324 - Dshi_0873 0.27 -0.3 890,331 + Dshi_0873 0.28 -2.7 890,331 + Dshi_0873 0.28 +3.3 890,331 + Dshi_0873 0.28 +0.3 890,339 - Dshi_0873 0.29 +0.7 890,339 - Dshi_0873 0.29 +2.5 890,347 + Dshi_0873 0.31 -3.7 890,350 + Dshi_0873 0.31 -0.3 890,355 - Dshi_0873 0.32 -0.1 890,358 + Dshi_0873 0.32 +1.4 890,359 + Dshi_0873 0.32 -0.7 890,359 + Dshi_0873 0.32 -0.2 890,400 - Dshi_0873 0.39 +0.8 890,402 + Dshi_0873 0.39 -1.9 890,404 + Dshi_0873 0.39 +0.7 890,409 + Dshi_0873 0.40 -1.5 890,410 + Dshi_0873 0.40 +1.2 890,410 - Dshi_0873 0.40 -0.3 890,412 - Dshi_0873 0.40 -1.7 890,418 - Dshi_0873 0.41 +0.1 890,418 - Dshi_0873 0.41 -3.6 890,425 + Dshi_0873 0.42 -0.7 890,425 + Dshi_0873 0.42 -0.2 890,426 + Dshi_0873 0.42 +0.1 890,426 + Dshi_0873 0.42 -1.3 890,426 + Dshi_0873 0.42 -0.3 890,433 - Dshi_0873 0.43 +1.7 890,433 - Dshi_0873 0.43 +0.7 890,434 - Dshi_0873 0.44 -1.3 890,434 - Dshi_0873 0.44 -0.3 890,434 - Dshi_0873 0.44 +1.3 890,434 - Dshi_0873 0.44 +0.5 890,434 - Dshi_0873 0.44 +0.7 890,434 - Dshi_0873 0.44 -0.5 890,434 - Dshi_0873 0.44 -0.4 890,434 - Dshi_0873 0.44 +1.0 890,434 - Dshi_0873 0.44 -3.2 890,444 - Dshi_0873 0.45 +0.7 890,456 + Dshi_0873 0.47 -1.7 890,459 - Dshi_0873 0.47 -0.8 890,468 - Dshi_0873 0.49 +3.5 890,469 + Dshi_0873 0.49 +3.7 890,469 + Dshi_0873 0.49 +3.0 890,469 + Dshi_0873 0.49 -2.7 890,469 + Dshi_0873 0.49 +0.7 890,469 + Dshi_0873 0.49 -1.1 890,469 + Dshi_0873 0.49 -0.5 890,471 - Dshi_0873 0.49 -1.7 890,477 + Dshi_0873 0.50 -0.7 890,477 - Dshi_0873 0.50 +1.0 890,477 - Dshi_0873 0.50 +1.7 890,483 + Dshi_0873 0.51 -2.1 890,493 + Dshi_0873 0.52 -0.3 890,501 - Dshi_0873 0.54 +1.1 890,502 + Dshi_0873 0.54 -0.9 890,510 - Dshi_0873 0.55 -0.6 890,510 - Dshi_0873 0.55 -0.7 890,510 - Dshi_0873 0.55 +0.2 890,547 + Dshi_0873 0.60 +1.3 890,577 - Dshi_0873 0.65 -0.3 890,580 + Dshi_0873 0.65 +1.7 890,580 + Dshi_0873 0.65 +1.0 890,583 + Dshi_0873 0.66 -1.7 890,583 + Dshi_0873 0.66 -2.7 890,588 + Dshi_0873 0.67 -1.2 890,588 + Dshi_0873 0.67 -0.7 890,588 + Dshi_0873 0.67 -1.0 890,588 + Dshi_0873 0.67 -0.4 890,588 + Dshi_0873 0.67 +1.3 890,588 + Dshi_0873 0.67 -0.1 890,588 + Dshi_0873 0.67 -2.7 890,588 - Dshi_0873 0.67 -2.3 890,593 + Dshi_0873 0.67 -1.4 890,596 - Dshi_0873 0.68 -1.3 890,596 - Dshi_0873 0.68 -0.3 890,596 - Dshi_0873 0.68 -0.4 890,596 - Dshi_0873 0.68 -1.5 890,596 - Dshi_0873 0.68 -1.6 890,596 - Dshi_0873 0.68 +0.7 890,596 - Dshi_0873 0.68 -0.4 890,596 - Dshi_0873 0.68 -1.5 890,596 - Dshi_0873 0.68 -1.5 890,597 + Dshi_0873 0.68 +0.3 890,601 - Dshi_0873 0.68 +1.3 890,601 - Dshi_0873 0.68 +3.0 890,602 + Dshi_0873 0.69 +2.7 890,602 + Dshi_0873 0.69 -0.7 890,605 - Dshi_0873 0.69 -0.3 890,605 - Dshi_0873 0.69 +1.2 890,610 - Dshi_0873 0.70 +0.4 890,610 - Dshi_0873 0.70 -0.9 890,610 - Dshi_0873 0.70 -3.4 890,616 + Dshi_0873 0.71 -0.7 890,624 - Dshi_0873 0.72 +0.7 890,628 + Dshi_0873 0.72 -0.9 890,636 - Dshi_0873 0.74 -1.2 890,647 + Dshi_0873 0.75 +0.3 890,647 + Dshi_0873 0.75 -1.3 890,652 + Dshi_0873 0.76 -1.1 890,652 + Dshi_0873 0.76 -0.8 890,652 + Dshi_0873 0.76 -2.0 890,655 + Dshi_0873 0.76 -0.5 890,657 + Dshi_0873 0.77 +1.0 890,657 + Dshi_0873 0.77 +0.8 890,657 + Dshi_0873 0.77 -1.0 890,657 + Dshi_0873 0.77 -1.9 890,658 - Dshi_0873 0.77 -2.7 890,659 - Dshi_0873 0.77 -3.0 890,665 - Dshi_0873 0.78 -0.1 890,665 - Dshi_0873 0.78 -1.1 890,665 - Dshi_0873 0.78 -0.5 890,683 - Dshi_0873 0.81 -0.3 890,683 - Dshi_0873 0.81 -1.2 890,713 + Dshi_0873 0.85 -1.4 890,723 + Dshi_0873 0.87 +0.0 890,744 - Dshi_0873 0.90 -1.3 890,744 - Dshi_0873 0.90 +1.0 890,768 + -4.0 890,768 - -0.0 890,813 - -1.3 890,816 + +0.1 890,816 + -0.4 890,816 + +1.1 890,816 + -0.7 890,824 - +2.2 890,824 - +2.2 890,824 - +2.5 890,825 - +3.0 890,826 + -2.5 890,826 + +1.1 890,826 + -0.9 890,826 + -1.8 890,834 - -0.3 890,834 - -2.7 890,834 - -0.9 890,834 - -0.4 890,834 - -1.8 890,835 - +0.1 890,841 + -0.4 890,945 - Dshi_0874 0.14 -1.9 890,946 - +0.1 890,968 - Dshi_0874 0.24 -3.7 890,995 + Dshi_0874 0.36 -0.7 891,003 - Dshi_0874 0.40 -1.8 891,003 - Dshi_0874 0.40 +0.3 891,008 + Dshi_0874 0.42 -1.8 891,010 + Dshi_0874 0.43 +1.2 891,022 - Dshi_0874 0.48 -0.0 891,025 + Dshi_0874 0.50 -2.1 891,031 + Dshi_0874 0.52 +0.6 891,039 - Dshi_0874 0.56 -0.2 891,039 - Dshi_0874 0.56 -0.5 891,042 + Dshi_0874 0.57 +0.1 891,050 - Dshi_0874 0.61 +0.1 891,050 - Dshi_0874 0.61 +2.5 891,050 - Dshi_0874 0.61 -0.5 891,050 - Dshi_0874 0.61 -1.1 891,072 + Dshi_0874 0.71 -3.7 891,072 + Dshi_0874 0.71 +2.0 891,073 + Dshi_0874 0.71 -2.7 891,080 - Dshi_0874 0.74 -0.1 891,081 - Dshi_0874 0.75 +1.9 891,092 + Dshi_0874 0.80 -0.9 891,117 - -1.1 891,119 - -1.2
Or see this region's nucleotide sequence