Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0865

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0862 and Dshi_0863 are separated by 32 nucleotidesDshi_0863 and Dshi_0864 are separated by 214 nucleotidesDshi_0864 and Dshi_0865 are separated by 1 nucleotidesDshi_0865 and Dshi_0866 are separated by 137 nucleotidesDshi_0866 and Dshi_0867 overlap by 4 nucleotides Dshi_0862: Dshi_0862 - Extracellular ligand-binding receptor (RefSeq), at 877,656 to 878,795 _0862 Dshi_0863: Dshi_0863 - transcriptional regulator, AsnC family (RefSeq), at 878,828 to 879,064 _0863 Dshi_0864: Dshi_0864 - (2Fe-2S)-binding domain protein (RefSeq), at 879,279 to 879,737 _0864 Dshi_0865: Dshi_0865 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 879,739 to 881,922 _0865 Dshi_0866: Dshi_0866 - alpha/beta hydrolase fold (RefSeq), at 882,060 to 882,755 _0866 Dshi_0867: Dshi_0867 - amidohydrolase 2 (RefSeq), at 882,752 to 883,624 _0867 Position (kb) 879 880 881 882Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 878.739 kb on - strandat 878.779 kb on - strandat 878.826 kb on + strandat 878.842 kb on + strandat 878.850 kb on - strandat 878.906 kb on + strand, within Dshi_0863at 878.911 kb on + strand, within Dshi_0863at 878.911 kb on + strand, within Dshi_0863at 878.995 kb on + strand, within Dshi_0863at 879.003 kb on - strand, within Dshi_0863at 879.049 kb on - strandat 879.059 kb on + strandat 879.067 kb on - strandat 879.067 kb on - strandat 879.081 kb on - strandat 879.112 kb on + strandat 879.192 kb on - strandat 879.221 kb on - strandat 879.231 kb on - strandat 879.245 kb on - strandat 879.294 kb on - strandat 879.369 kb on - strand, within Dshi_0864at 879.502 kb on - strand, within Dshi_0864at 879.528 kb on + strand, within Dshi_0864at 879.571 kb on + strand, within Dshi_0864at 879.678 kb on - strand, within Dshi_0864at 879.752 kb on - strandat 879.758 kb on - strandat 879.856 kb on + strandat 879.864 kb on - strandat 879.878 kb on + strandat 879.886 kb on - strandat 879.900 kb on + strandat 879.949 kb on + strandat 879.972 kb on + strand, within Dshi_0865at 880.012 kb on - strand, within Dshi_0865at 880.047 kb on + strand, within Dshi_0865at 880.055 kb on - strand, within Dshi_0865at 880.085 kb on - strand, within Dshi_0865at 880.097 kb on - strand, within Dshi_0865at 880.202 kb on - strand, within Dshi_0865at 880.221 kb on + strand, within Dshi_0865at 880.265 kb on - strand, within Dshi_0865at 880.404 kb on + strand, within Dshi_0865at 880.404 kb on + strand, within Dshi_0865at 880.462 kb on + strand, within Dshi_0865at 880.488 kb on + strand, within Dshi_0865at 880.630 kb on - strand, within Dshi_0865at 880.836 kb on + strand, within Dshi_0865at 880.862 kb on + strand, within Dshi_0865at 880.907 kb on - strand, within Dshi_0865at 880.964 kb on - strand, within Dshi_0865at 881.028 kb on + strand, within Dshi_0865at 881.028 kb on + strand, within Dshi_0865at 881.057 kb on - strand, within Dshi_0865at 881.275 kb on - strand, within Dshi_0865at 881.357 kb on - strand, within Dshi_0865at 881.432 kb on - strand, within Dshi_0865at 881.460 kb on + strand, within Dshi_0865at 881.466 kb on + strand, within Dshi_0865at 881.506 kb on + strand, within Dshi_0865at 881.594 kb on + strand, within Dshi_0865at 881.602 kb on - strand, within Dshi_0865at 881.643 kb on + strandat 881.643 kb on + strand, within Dshi_0865at 881.651 kb on - strand, within Dshi_0865at 881.653 kb on + strand, within Dshi_0865at 881.666 kb on - strand, within Dshi_0865at 881.666 kb on - strand, within Dshi_0865at 881.743 kb on + strandat 881.751 kb on - strandat 881.770 kb on + strandat 881.810 kb on - strandat 881.950 kb on + strandat 882.047 kb on - strandat 882.054 kb on - strandat 882.081 kb on + strandat 882.119 kb on + strandat 882.231 kb on + strand, within Dshi_0866at 882.241 kb on + strand, within Dshi_0866at 882.292 kb on - strand, within Dshi_0866at 882.298 kb on + strand, within Dshi_0866at 882.346 kb on - strand, within Dshi_0866at 882.400 kb on + strand, within Dshi_0866at 882.544 kb on + strand, within Dshi_0866at 882.652 kb on - strand, within Dshi_0866at 882.700 kb on - strandat 882.797 kb on + strandat 882.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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878,739 - -1.3
878,779 - -0.9
878,826 + +0.7
878,842 + -0.9
878,850 - -1.9
878,906 + Dshi_0863 0.33 +2.3
878,911 + Dshi_0863 0.35 +0.7
878,911 + Dshi_0863 0.35 +4.0
878,995 + Dshi_0863 0.70 -3.0
879,003 - Dshi_0863 0.74 -0.3
879,049 - +0.7
879,059 + -2.3
879,067 - +1.0
879,067 - -0.8
879,081 - +0.7
879,112 + +0.7
879,192 - +1.7
879,221 - -0.3
879,231 - -2.9
879,245 - +0.7
879,294 - +0.7
879,369 - Dshi_0864 0.20 -0.0
879,502 - Dshi_0864 0.49 -0.2
879,528 + Dshi_0864 0.54 -0.2
879,571 + Dshi_0864 0.64 -0.9
879,678 - Dshi_0864 0.87 -1.4
879,752 - -0.9
879,758 - -2.2
879,856 + +0.7
879,864 - -1.2
879,878 + +0.7
879,886 - +1.3
879,900 + -0.5
879,949 + -2.2
879,972 + Dshi_0865 0.11 +2.3
880,012 - Dshi_0865 0.12 +1.7
880,047 + Dshi_0865 0.14 +0.7
880,055 - Dshi_0865 0.14 +0.4
880,085 - Dshi_0865 0.16 +0.7
880,097 - Dshi_0865 0.16 +0.7
880,202 - Dshi_0865 0.21 -0.2
880,221 + Dshi_0865 0.22 +3.3
880,265 - Dshi_0865 0.24 +1.7
880,404 + Dshi_0865 0.30 -1.6
880,404 + Dshi_0865 0.30 -0.9
880,462 + Dshi_0865 0.33 +0.7
880,488 + Dshi_0865 0.34 +1.7
880,630 - Dshi_0865 0.41 -2.3
880,836 + Dshi_0865 0.50 -0.9
880,862 + Dshi_0865 0.51 -0.1
880,907 - Dshi_0865 0.53 +1.1
880,964 - Dshi_0865 0.56 +1.7
881,028 + Dshi_0865 0.59 +0.7
881,028 + Dshi_0865 0.59 -0.3
881,057 - Dshi_0865 0.60 -1.3
881,275 - Dshi_0865 0.70 +0.7
881,357 - Dshi_0865 0.74 -0.3
881,432 - Dshi_0865 0.78 +0.7
881,460 + Dshi_0865 0.79 -1.9
881,466 + Dshi_0865 0.79 +0.7
881,506 + Dshi_0865 0.81 -0.3
881,594 + Dshi_0865 0.85 -2.1
881,602 - Dshi_0865 0.85 -0.9
881,643 + +0.7
881,643 + Dshi_0865 0.87 +0.1
881,651 - Dshi_0865 0.88 -1.6
881,653 + Dshi_0865 0.88 -1.9
881,666 - Dshi_0865 0.88 +1.4
881,666 - Dshi_0865 0.88 -3.0
881,743 + +0.7
881,751 - +0.4
881,770 + +0.2
881,810 - +3.5
881,950 + -1.3
882,047 - -1.6
882,054 - -0.8
882,081 + -0.3
882,119 + -1.6
882,231 + Dshi_0866 0.25 -1.0
882,241 + Dshi_0866 0.26 +3.0
882,292 - Dshi_0866 0.33 -0.9
882,298 + Dshi_0866 0.34 -0.7
882,346 - Dshi_0866 0.41 +0.7
882,400 + Dshi_0866 0.49 -0.9
882,544 + Dshi_0866 0.70 +0.7
882,652 - Dshi_0866 0.85 -0.6
882,700 - +0.7
882,797 + +0.7
882,807 - -1.6

Or see this region's nucleotide sequence