Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0815 and Dshi_0816 are separated by 46 nucleotides Dshi_0816 and Dshi_0817 are separated by 76 nucleotides Dshi_0817 and Dshi_0818 overlap by 4 nucleotides Dshi_0818 and Dshi_0819 are separated by 24 nucleotides Dshi_0819 and Dshi_0820 are separated by 220 nucleotides
Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863
_0815
Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185
_0816
Dshi_0817: Dshi_0817 - hypothetical protein (RefSeq), at 823,262 to 823,522
_0817
Dshi_0818: Dshi_0818 - hypothetical protein (RefSeq), at 823,519 to 823,725
_0818
Dshi_0819: Dshi_0819 - hypothetical protein (RefSeq), at 823,750 to 824,046
_0819
Dshi_0820: Dshi_0820 - alpha/beta hydrolase fold (RefSeq), at 824,267 to 825,034
_0820
Position (kb) 823
824 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 822.532 kb on - strand, within Dshi_0815 at 822.683 kb on - strand, within Dshi_0815 at 822.713 kb on - strand, within Dshi_0815 at 822.771 kb on - strand, within Dshi_0815 at 822.796 kb on + strand, within Dshi_0815 at 822.993 kb on - strand, within Dshi_0816 at 823.175 kb on + strand at 823.242 kb on + strand at 823.242 kb on + strand at 823.267 kb on - strand at 823.288 kb on + strand, within Dshi_0817 at 823.306 kb on + strand, within Dshi_0817 at 823.321 kb on + strand, within Dshi_0817 at 823.384 kb on - strand, within Dshi_0817 at 823.573 kb on - strand, within Dshi_0818 at 823.708 kb on + strand at 823.793 kb on - strand, within Dshi_0819 at 823.830 kb on - strand, within Dshi_0819 at 823.857 kb on - strand, within Dshi_0819 at 823.908 kb on + strand, within Dshi_0819 at 823.942 kb on + strand, within Dshi_0819 at 823.957 kb on + strand, within Dshi_0819 at 823.974 kb on - strand, within Dshi_0819 at 824.006 kb on + strand, within Dshi_0819 at 824.077 kb on + strand at 824.085 kb on - strand at 824.101 kb on + strand at 824.101 kb on + strand at 824.109 kb on - strand at 824.167 kb on + strand at 824.319 kb on + strand at 824.451 kb on - strand, within Dshi_0820 at 824.451 kb on - strand, within Dshi_0820 at 824.686 kb on + strand, within Dshi_0820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 822,532 - Dshi_0815 0.20 -1.8 822,683 - Dshi_0815 0.57 -1.3 822,713 - Dshi_0815 0.64 -0.8 822,771 - Dshi_0815 0.78 +1.6 822,796 + Dshi_0815 0.84 -0.2 822,993 - Dshi_0816 0.30 +3.4 823,175 + +1.6 823,242 + +1.0 823,242 + -1.2 823,267 - -1.2 823,288 + Dshi_0817 0.10 +0.8 823,306 + Dshi_0817 0.17 -0.0 823,321 + Dshi_0817 0.23 +3.1 823,384 - Dshi_0817 0.47 +0.8 823,573 - Dshi_0818 0.26 +1.0 823,708 + -2.9 823,793 - Dshi_0819 0.14 -0.5 823,830 - Dshi_0819 0.27 +0.6 823,857 - Dshi_0819 0.36 -4.1 823,908 + Dshi_0819 0.53 +0.8 823,942 + Dshi_0819 0.65 -2.0 823,957 + Dshi_0819 0.70 -2.7 823,974 - Dshi_0819 0.75 +0.1 824,006 + Dshi_0819 0.86 +2.4 824,077 + +0.8 824,085 - +1.2 824,101 + -2.2 824,101 + -0.2 824,109 - +0.2 824,167 + -2.2 824,319 + -1.0 824,451 - Dshi_0820 0.24 +1.2 824,451 - Dshi_0820 0.24 +1.5 824,686 + Dshi_0820 0.55 -0.2
Or see this region's nucleotide sequence