Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0815

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0812 and Dshi_0813 are separated by 54 nucleotidesDshi_0813 and Dshi_0814 are separated by 89 nucleotidesDshi_0814 and Dshi_0815 are separated by 204 nucleotidesDshi_0815 and Dshi_0816 are separated by 46 nucleotidesDshi_0816 and Dshi_0817 are separated by 76 nucleotidesDshi_0817 and Dshi_0818 overlap by 4 nucleotidesDshi_0818 and Dshi_0819 are separated by 24 nucleotides Dshi_0812: Dshi_0812 - transcriptional regulator, TraR/DksA family (RefSeq), at 821,347 to 821,664 _0812 Dshi_0813: Dshi_0813 - hypothetical protein (RefSeq), at 821,719 to 821,967 _0813 Dshi_0814: Dshi_0814 - hypothetical protein (RefSeq), at 822,057 to 822,242 _0814 Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863 _0815 Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185 _0816 Dshi_0817: Dshi_0817 - hypothetical protein (RefSeq), at 823,262 to 823,522 _0817 Dshi_0818: Dshi_0818 - hypothetical protein (RefSeq), at 823,519 to 823,725 _0818 Dshi_0819: Dshi_0819 - hypothetical protein (RefSeq), at 823,750 to 824,046 _0819 Position (kb) 822 823Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 821.461 kb on - strand, within Dshi_0812at 821.488 kb on - strand, within Dshi_0812at 821.529 kb on - strand, within Dshi_0812at 821.613 kb on + strand, within Dshi_0812at 821.621 kb on - strand, within Dshi_0812at 821.637 kb on + strandat 821.709 kb on - strandat 821.812 kb on + strand, within Dshi_0813at 821.844 kb on - strand, within Dshi_0813at 821.878 kb on - strand, within Dshi_0813at 821.878 kb on - strand, within Dshi_0813at 821.940 kb on + strand, within Dshi_0813at 821.969 kb on - strandat 821.969 kb on - strandat 821.971 kb on + strandat 822.021 kb on - strandat 822.038 kb on - strandat 822.275 kb on - strandat 822.280 kb on - strandat 822.532 kb on - strand, within Dshi_0815at 822.683 kb on - strand, within Dshi_0815at 822.713 kb on - strand, within Dshi_0815at 822.771 kb on - strand, within Dshi_0815at 822.796 kb on + strand, within Dshi_0815at 822.993 kb on - strand, within Dshi_0816at 823.175 kb on + strandat 823.242 kb on + strandat 823.242 kb on + strandat 823.267 kb on - strandat 823.288 kb on + strand, within Dshi_0817at 823.306 kb on + strand, within Dshi_0817at 823.321 kb on + strand, within Dshi_0817at 823.384 kb on - strand, within Dshi_0817at 823.573 kb on - strand, within Dshi_0818at 823.708 kb on + strandat 823.793 kb on - strand, within Dshi_0819at 823.830 kb on - strand, within Dshi_0819at 823.857 kb on - strand, within Dshi_0819

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
821,461 - Dshi_0812 0.36 +0.2
821,488 - Dshi_0812 0.44 -0.2
821,529 - Dshi_0812 0.57 -1.8
821,613 + Dshi_0812 0.84 +0.3
821,621 - Dshi_0812 0.86 +0.3
821,637 + -1.2
821,709 - -2.0
821,812 + Dshi_0813 0.37 +2.4
821,844 - Dshi_0813 0.50 +0.5
821,878 - Dshi_0813 0.64 +1.8
821,878 - Dshi_0813 0.64 +0.4
821,940 + Dshi_0813 0.89 +1.5
821,969 - -1.0
821,969 - -2.0
821,971 + +0.8
822,021 - -0.5
822,038 - -2.0
822,275 - -4.0
822,280 - +3.1
822,532 - Dshi_0815 0.20 -1.8
822,683 - Dshi_0815 0.57 -1.3
822,713 - Dshi_0815 0.64 -0.8
822,771 - Dshi_0815 0.78 +1.6
822,796 + Dshi_0815 0.84 -0.2
822,993 - Dshi_0816 0.30 +3.4
823,175 + +1.6
823,242 + +1.0
823,242 + -1.2
823,267 - -1.2
823,288 + Dshi_0817 0.10 +0.8
823,306 + Dshi_0817 0.17 -0.0
823,321 + Dshi_0817 0.23 +3.1
823,384 - Dshi_0817 0.47 +0.8
823,573 - Dshi_0818 0.26 +1.0
823,708 + -2.9
823,793 - Dshi_0819 0.14 -0.5
823,830 - Dshi_0819 0.27 +0.6
823,857 - Dshi_0819 0.36 -4.1

Or see this region's nucleotide sequence