Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0717 and Dshi_0718 are separated by 349 nucleotides Dshi_0718 and Dshi_0719 are separated by 99 nucleotides Dshi_0719 and Dshi_0720 overlap by 8 nucleotides Dshi_0720 and Dshi_0721 overlap by 4 nucleotides
Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906
_0717
Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data) , at 726,256 to 727,788
_0718
Dshi_0719: Dshi_0719 - hypothetical protein (RefSeq), at 727,888 to 728,286
_0719
Dshi_0720: Dshi_0720 - Endoribonuclease L-PSP (RefSeq), at 728,279 to 728,668
_0720
Dshi_0721: Dshi_0721 - hypothetical protein (RefSeq), at 728,665 to 729,036
_0721
Position (kb)
726
727
728 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 725.266 kb on + strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.341 kb on - strand, within Dshi_0717 at 725.467 kb on + strand, within Dshi_0717 at 725.507 kb on + strand, within Dshi_0717 at 725.518 kb on - strand, within Dshi_0717 at 725.597 kb on - strand, within Dshi_0717 at 725.615 kb on + strand, within Dshi_0717 at 725.745 kb on + strand, within Dshi_0717 at 725.745 kb on - strand, within Dshi_0717 at 725.753 kb on - strand, within Dshi_0717 at 725.753 kb on - strand, within Dshi_0717 at 725.848 kb on - strand at 725.863 kb on + strand at 725.871 kb on + strand at 725.908 kb on + strand at 725.916 kb on - strand at 725.916 kb on - strand at 725.916 kb on - strand at 725.916 kb on - strand at 725.979 kb on + strand at 726.005 kb on - strand at 726.063 kb on + strand at 726.063 kb on + strand at 726.063 kb on + strand at 726.071 kb on - strand at 726.071 kb on - strand at 726.071 kb on - strand at 726.226 kb on - strand at 726.253 kb on - strand at 726.255 kb on + strand at 726.422 kb on - strand, within Dshi_0718 at 726.459 kb on - strand, within Dshi_0718 at 726.533 kb on + strand, within Dshi_0718 at 726.538 kb on + strand, within Dshi_0718 at 726.563 kb on + strand, within Dshi_0718 at 726.691 kb on - strand, within Dshi_0718 at 726.766 kb on + strand, within Dshi_0718 at 726.777 kb on - strand, within Dshi_0718 at 726.815 kb on + strand, within Dshi_0718 at 726.825 kb on - strand, within Dshi_0718 at 726.844 kb on - strand, within Dshi_0718 at 726.878 kb on + strand, within Dshi_0718 at 727.210 kb on - strand, within Dshi_0718 at 727.230 kb on + strand, within Dshi_0718 at 727.257 kb on - strand, within Dshi_0718 at 727.355 kb on + strand, within Dshi_0718 at 727.428 kb on + strand, within Dshi_0718 at 727.428 kb on + strand, within Dshi_0718 at 727.441 kb on + strand, within Dshi_0718 at 727.456 kb on + strand, within Dshi_0718 at 727.457 kb on - strand, within Dshi_0718 at 727.467 kb on + strand, within Dshi_0718 at 727.510 kb on + strand, within Dshi_0718 at 727.590 kb on - strand, within Dshi_0718 at 727.836 kb on - strand at 727.875 kb on - strand at 727.880 kb on - strand at 727.915 kb on + strand at 727.923 kb on + strand at 728.062 kb on + strand, within Dshi_0719 at 728.226 kb on + strand, within Dshi_0719 at 728.236 kb on + strand, within Dshi_0719 at 728.409 kb on + strand, within Dshi_0720 at 728.440 kb on + strand, within Dshi_0720 at 728.562 kb on - strand, within Dshi_0720 at 728.562 kb on - strand, within Dshi_0720 at 728.580 kb on - strand, within Dshi_0720 at 728.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 725,266 + Dshi_0717 0.48 -1.9 725,274 - Dshi_0717 0.48 +1.8 725,274 - Dshi_0717 0.48 +0.8 725,274 - Dshi_0717 0.48 -0.6 725,329 + Dshi_0717 0.53 -3.3 725,329 + Dshi_0717 0.53 -2.2 725,341 - Dshi_0717 0.54 +0.8 725,467 + Dshi_0717 0.64 -1.4 725,507 + Dshi_0717 0.67 -0.2 725,518 - Dshi_0717 0.68 -2.2 725,597 - Dshi_0717 0.75 -0.7 725,615 + Dshi_0717 0.76 +0.3 725,745 + Dshi_0717 0.87 -0.6 725,745 - Dshi_0717 0.87 -0.8 725,753 - Dshi_0717 0.87 -2.4 725,753 - Dshi_0717 0.87 -0.2 725,848 - -0.5 725,863 + -3.8 725,871 + -0.2 725,908 + -0.2 725,916 - +1.1 725,916 - +1.2 725,916 - -0.6 725,916 - -2.4 725,979 + +2.3 726,005 - +3.3 726,063 + +1.3 726,063 + -0.8 726,063 + +0.8 726,071 - -1.8 726,071 - +1.6 726,071 - -1.8 726,226 - +2.1 726,253 - -0.2 726,255 + -0.2 726,422 - Dshi_0718 0.11 -1.8 726,459 - Dshi_0718 0.13 -1.2 726,533 + Dshi_0718 0.18 -1.4 726,538 + Dshi_0718 0.18 -0.8 726,563 + Dshi_0718 0.20 +0.5 726,691 - Dshi_0718 0.28 +2.3 726,766 + Dshi_0718 0.33 -1.4 726,777 - Dshi_0718 0.34 +0.2 726,815 + Dshi_0718 0.36 -1.1 726,825 - Dshi_0718 0.37 -1.5 726,844 - Dshi_0718 0.38 +0.8 726,878 + Dshi_0718 0.41 -0.3 727,210 - Dshi_0718 0.62 +2.8 727,230 + Dshi_0718 0.64 +2.3 727,257 - Dshi_0718 0.65 -0.0 727,355 + Dshi_0718 0.72 +0.8 727,428 + Dshi_0718 0.76 +0.2 727,428 + Dshi_0718 0.76 +0.8 727,441 + Dshi_0718 0.77 -0.2 727,456 + Dshi_0718 0.78 -0.4 727,457 - Dshi_0718 0.78 -2.2 727,467 + Dshi_0718 0.79 +2.8 727,510 + Dshi_0718 0.82 -2.4 727,590 - Dshi_0718 0.87 +0.2 727,836 - -0.6 727,875 - +2.2 727,880 - -0.1 727,915 + +0.5 727,923 + +0.8 728,062 + Dshi_0719 0.44 +0.8 728,226 + Dshi_0719 0.85 -2.2 728,236 + Dshi_0719 0.87 +1.2 728,409 + Dshi_0720 0.33 -2.2 728,440 + Dshi_0720 0.41 +0.8 728,562 - Dshi_0720 0.73 +0.6 728,562 - Dshi_0720 0.73 -0.4 728,580 - Dshi_0720 0.77 -0.6 728,643 - -0.8
Or see this region's nucleotide sequence