Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0698

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0697 and Dshi_0698 are separated by 43 nucleotidesDshi_0698 and Dshi_0699 are separated by 0 nucleotides Dshi_0697: Dshi_0697 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 703,665 to 704,675 _0697 Dshi_0698: Dshi_0698 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 704,719 to 705,225 _0698 Dshi_0699: Dshi_0699 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 705,226 to 706,539 _0699 Position (kb) 704 705 706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 703.768 kb on + strand, within Dshi_0697at 703.772 kb on + strand, within Dshi_0697at 703.775 kb on - strand, within Dshi_0697at 703.775 kb on - strand, within Dshi_0697at 703.780 kb on - strand, within Dshi_0697at 703.786 kb on + strand, within Dshi_0697at 703.816 kb on - strand, within Dshi_0697at 703.881 kb on - strand, within Dshi_0697at 703.883 kb on + strand, within Dshi_0697at 703.891 kb on - strand, within Dshi_0697at 703.910 kb on + strand, within Dshi_0697at 703.975 kb on + strand, within Dshi_0697at 704.056 kb on - strand, within Dshi_0697at 704.065 kb on - strand, within Dshi_0697at 704.087 kb on + strand, within Dshi_0697at 704.097 kb on - strand, within Dshi_0697at 704.097 kb on - strand, within Dshi_0697at 704.097 kb on - strand, within Dshi_0697at 704.152 kb on + strand, within Dshi_0697at 704.152 kb on + strand, within Dshi_0697at 704.152 kb on + strand, within Dshi_0697at 704.230 kb on + strand, within Dshi_0697at 704.237 kb on + strand, within Dshi_0697at 704.237 kb on + strand, within Dshi_0697at 704.245 kb on - strand, within Dshi_0697at 704.359 kb on + strand, within Dshi_0697at 704.370 kb on + strand, within Dshi_0697at 704.445 kb on + strand, within Dshi_0697at 704.463 kb on - strand, within Dshi_0697at 704.464 kb on - strand, within Dshi_0697at 704.507 kb on - strand, within Dshi_0697at 704.543 kb on - strand, within Dshi_0697at 704.549 kb on + strand, within Dshi_0697at 704.549 kb on - strand, within Dshi_0697at 704.554 kb on + strand, within Dshi_0697at 704.555 kb on + strand, within Dshi_0697at 704.570 kb on + strand, within Dshi_0697at 704.575 kb on + strandat 704.657 kb on - strandat 704.775 kb on - strand, within Dshi_0698at 704.777 kb on + strand, within Dshi_0698at 704.782 kb on + strand, within Dshi_0698at 704.782 kb on + strand, within Dshi_0698at 704.792 kb on + strand, within Dshi_0698at 704.831 kb on + strand, within Dshi_0698at 704.859 kb on + strand, within Dshi_0698at 704.864 kb on - strand, within Dshi_0698at 704.869 kb on + strand, within Dshi_0698at 704.872 kb on - strand, within Dshi_0698at 704.963 kb on + strand, within Dshi_0698at 704.972 kb on - strand, within Dshi_0698at 705.003 kb on + strand, within Dshi_0698at 705.013 kb on + strand, within Dshi_0698at 705.028 kb on + strand, within Dshi_0698at 705.046 kb on - strand, within Dshi_0698at 705.052 kb on - strand, within Dshi_0698at 705.098 kb on + strand, within Dshi_0698at 705.101 kb on - strand, within Dshi_0698at 705.179 kb on - strandat 705.179 kb on - strandat 705.284 kb on - strandat 705.285 kb on + strandat 705.311 kb on - strandat 705.401 kb on + strand, within Dshi_0699at 705.543 kb on - strand, within Dshi_0699at 705.580 kb on - strand, within Dshi_0699at 705.610 kb on - strand, within Dshi_0699at 705.626 kb on - strand, within Dshi_0699at 706.010 kb on - strand, within Dshi_0699at 706.023 kb on + strand, within Dshi_0699at 706.183 kb on - strand, within Dshi_0699at 706.212 kb on + strand, within Dshi_0699

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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703,768 + Dshi_0697 0.10 -2.2
703,772 + Dshi_0697 0.11 -0.3
703,775 - Dshi_0697 0.11 +1.7
703,775 - Dshi_0697 0.11 +0.7
703,780 - Dshi_0697 0.11 +1.3
703,786 + Dshi_0697 0.12 +1.3
703,816 - Dshi_0697 0.15 +0.7
703,881 - Dshi_0697 0.21 +0.7
703,883 + Dshi_0697 0.22 +0.3
703,891 - Dshi_0697 0.22 -0.4
703,910 + Dshi_0697 0.24 -0.1
703,975 + Dshi_0697 0.31 -1.7
704,056 - Dshi_0697 0.39 -0.3
704,065 - Dshi_0697 0.40 -2.1
704,087 + Dshi_0697 0.42 -0.3
704,097 - Dshi_0697 0.43 -0.8
704,097 - Dshi_0697 0.43 -4.0
704,097 - Dshi_0697 0.43 -1.6
704,152 + Dshi_0697 0.48 -0.3
704,152 + Dshi_0697 0.48 +0.6
704,152 + Dshi_0697 0.48 -3.2
704,230 + Dshi_0697 0.56 +0.7
704,237 + Dshi_0697 0.57 -0.3
704,237 + Dshi_0697 0.57 +1.0
704,245 - Dshi_0697 0.57 -0.4
704,359 + Dshi_0697 0.69 -0.8
704,370 + Dshi_0697 0.70 +0.7
704,445 + Dshi_0697 0.77 -0.5
704,463 - Dshi_0697 0.79 +3.5
704,464 - Dshi_0697 0.79 +0.7
704,507 - Dshi_0697 0.83 +1.2
704,543 - Dshi_0697 0.87 -0.6
704,549 + Dshi_0697 0.87 -1.1
704,549 - Dshi_0697 0.87 +0.2
704,554 + Dshi_0697 0.88 +0.7
704,555 + Dshi_0697 0.88 +2.7
704,570 + Dshi_0697 0.90 -1.2
704,575 + -1.3
704,657 - -0.5
704,775 - Dshi_0698 0.11 -0.5
704,777 + Dshi_0698 0.11 +0.7
704,782 + Dshi_0698 0.12 +0.7
704,782 + Dshi_0698 0.12 -0.5
704,792 + Dshi_0698 0.14 -2.3
704,831 + Dshi_0698 0.22 +1.9
704,859 + Dshi_0698 0.28 -2.2
704,864 - Dshi_0698 0.29 +1.7
704,869 + Dshi_0698 0.30 -0.3
704,872 - Dshi_0698 0.30 +1.3
704,963 + Dshi_0698 0.48 -1.4
704,972 - Dshi_0698 0.50 +0.7
705,003 + Dshi_0698 0.56 -1.8
705,013 + Dshi_0698 0.58 +2.1
705,028 + Dshi_0698 0.61 -0.5
705,046 - Dshi_0698 0.64 -0.6
705,052 - Dshi_0698 0.66 -1.3
705,098 + Dshi_0698 0.75 -1.3
705,101 - Dshi_0698 0.75 -0.2
705,179 - +0.7
705,179 - -0.3
705,284 - -1.7
705,285 + -0.8
705,311 - -0.1
705,401 + Dshi_0699 0.13 +0.3
705,543 - Dshi_0699 0.24 +1.2
705,580 - Dshi_0699 0.27 -0.8
705,610 - Dshi_0699 0.29 +0.7
705,626 - Dshi_0699 0.30 +1.3
706,010 - Dshi_0699 0.60 +1.5
706,023 + Dshi_0699 0.61 -1.7
706,183 - Dshi_0699 0.73 -0.3
706,212 + Dshi_0699 0.75 -1.8

Or see this region's nucleotide sequence