Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0684 and Dshi_0685 are separated by 7 nucleotides Dshi_0685 and Dshi_0686 overlap by 4 nucleotides Dshi_0686 and Dshi_0687 are separated by 107 nucleotides
Dshi_0684: Dshi_0684 - protein of unknown function DUF1150 (RefSeq), at 689,230 to 689,457
_0684
Dshi_0685: Dshi_0685 - ApbE family lipoprotein (RefSeq), at 689,465 to 690,361
_0685
Dshi_0686: Dshi_0686 - regulatory protein, putative (RefSeq), at 690,358 to 692,448
_0686
Dshi_0687: Dshi_0687 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 692,556 to 693,332
_0687
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.508 kb on - strand at 689.518 kb on - strand at 689.628 kb on - strand, within Dshi_0685 at 689.695 kb on + strand, within Dshi_0685 at 689.780 kb on - strand, within Dshi_0685 at 689.840 kb on - strand, within Dshi_0685 at 689.892 kb on - strand, within Dshi_0685 at 689.902 kb on + strand, within Dshi_0685 at 689.949 kb on - strand, within Dshi_0685 at 689.951 kb on + strand, within Dshi_0685 at 690.041 kb on - strand, within Dshi_0685 at 690.133 kb on - strand, within Dshi_0685 at 690.186 kb on - strand, within Dshi_0685 at 690.212 kb on - strand, within Dshi_0685 at 690.368 kb on + strand at 690.414 kb on - strand at 690.433 kb on + strand at 690.515 kb on + strand at 690.598 kb on + strand, within Dshi_0686 at 690.608 kb on + strand, within Dshi_0686 at 690.643 kb on + strand, within Dshi_0686 at 690.646 kb on - strand, within Dshi_0686 at 690.686 kb on + strand, within Dshi_0686 at 690.694 kb on - strand, within Dshi_0686 at 690.733 kb on - strand, within Dshi_0686 at 690.780 kb on - strand, within Dshi_0686 at 690.826 kb on - strand, within Dshi_0686 at 690.915 kb on + strand, within Dshi_0686 at 690.980 kb on - strand, within Dshi_0686 at 691.003 kb on - strand, within Dshi_0686 at 691.035 kb on - strand, within Dshi_0686 at 691.083 kb on - strand, within Dshi_0686 at 691.088 kb on - strand, within Dshi_0686 at 691.141 kb on - strand, within Dshi_0686 at 691.234 kb on - strand, within Dshi_0686 at 691.253 kb on - strand, within Dshi_0686 at 691.307 kb on - strand at 691.377 kb on + strand, within Dshi_0686 at 691.457 kb on - strand, within Dshi_0686 at 691.488 kb on + strand, within Dshi_0686 at 691.553 kb on + strand, within Dshi_0686 at 691.661 kb on - strand, within Dshi_0686 at 691.719 kb on + strand, within Dshi_0686 at 691.719 kb on + strand, within Dshi_0686 at 691.727 kb on - strand, within Dshi_0686 at 691.810 kb on + strand, within Dshi_0686 at 691.810 kb on + strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.837 kb on - strand, within Dshi_0686 at 691.899 kb on + strand, within Dshi_0686 at 691.899 kb on + strand, within Dshi_0686 at 691.913 kb on + strand, within Dshi_0686 at 691.923 kb on + strand, within Dshi_0686 at 691.996 kb on - strand, within Dshi_0686 at 692.196 kb on + strand, within Dshi_0686 at 692.431 kb on + strand at 692.519 kb on + strand at 692.540 kb on + strand at 692.592 kb on + strand at 692.613 kb on - strand at 692.637 kb on + strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.805 kb on + strand, within Dshi_0687 at 692.823 kb on + strand, within Dshi_0687 at 692.956 kb on - strand, within Dshi_0687 at 693.112 kb on + strand, within Dshi_0687 at 693.203 kb on + strand, within Dshi_0687 at 693.232 kb on - strand, within Dshi_0687 at 693.368 kb on - strand at 693.393 kb on + strand at 693.440 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 689,508 - -0.9 689,518 - -2.5 689,628 - Dshi_0685 0.18 +0.1 689,695 + Dshi_0685 0.26 +0.7 689,780 - Dshi_0685 0.35 +2.1 689,840 - Dshi_0685 0.42 -0.5 689,892 - Dshi_0685 0.48 -0.0 689,902 + Dshi_0685 0.49 +1.3 689,949 - Dshi_0685 0.54 -0.5 689,951 + Dshi_0685 0.54 +1.6 690,041 - Dshi_0685 0.64 -1.6 690,133 - Dshi_0685 0.74 -1.9 690,186 - Dshi_0685 0.80 -0.7 690,212 - Dshi_0685 0.83 +0.3 690,368 + +1.0 690,414 - +0.7 690,433 + +0.7 690,515 + -0.9 690,598 + Dshi_0686 0.11 +0.4 690,608 + Dshi_0686 0.12 -2.8 690,643 + Dshi_0686 0.14 -1.3 690,646 - Dshi_0686 0.14 -0.0 690,686 + Dshi_0686 0.16 +0.7 690,694 - Dshi_0686 0.16 -0.9 690,733 - Dshi_0686 0.18 +0.7 690,780 - Dshi_0686 0.20 -1.5 690,826 - Dshi_0686 0.22 -2.5 690,915 + Dshi_0686 0.27 +0.8 690,980 - Dshi_0686 0.30 -1.8 691,003 - Dshi_0686 0.31 -0.2 691,035 - Dshi_0686 0.32 -3.1 691,083 - Dshi_0686 0.35 +2.0 691,088 - Dshi_0686 0.35 -1.9 691,141 - Dshi_0686 0.37 +1.1 691,234 - Dshi_0686 0.42 +0.7 691,253 - Dshi_0686 0.43 +0.7 691,307 - +0.7 691,377 + Dshi_0686 0.49 -0.3 691,457 - Dshi_0686 0.53 +0.7 691,488 + Dshi_0686 0.54 +2.3 691,553 + Dshi_0686 0.57 -1.2 691,661 - Dshi_0686 0.62 -0.6 691,719 + Dshi_0686 0.65 +0.2 691,719 + Dshi_0686 0.65 -2.1 691,727 - Dshi_0686 0.65 +0.7 691,810 + Dshi_0686 0.69 +0.1 691,810 + Dshi_0686 0.69 -0.6 691,818 - Dshi_0686 0.70 -0.9 691,818 - Dshi_0686 0.70 -0.8 691,818 - Dshi_0686 0.70 +0.1 691,837 - Dshi_0686 0.71 -2.3 691,899 + Dshi_0686 0.74 -1.5 691,899 + Dshi_0686 0.74 -0.3 691,913 + Dshi_0686 0.74 -1.8 691,923 + Dshi_0686 0.75 -1.1 691,996 - Dshi_0686 0.78 -0.6 692,196 + Dshi_0686 0.88 -0.6 692,431 + -0.3 692,519 + +0.7 692,540 + -2.6 692,592 + -3.3 692,613 - -2.3 692,637 + Dshi_0687 0.10 -3.5 692,684 - Dshi_0687 0.16 -1.3 692,684 - Dshi_0687 0.16 -0.8 692,805 + Dshi_0687 0.32 +0.7 692,823 + Dshi_0687 0.34 -0.4 692,956 - Dshi_0687 0.51 -0.3 693,112 + Dshi_0687 0.72 -0.4 693,203 + Dshi_0687 0.83 -1.3 693,232 - Dshi_0687 0.87 -3.0 693,368 - -1.6 693,393 + +0.7 693,440 + -1.6
Or see this region's nucleotide sequence