Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0615 and Dshi_0616 are separated by 111 nucleotides Dshi_0616 and Dshi_0617 are separated by 372 nucleotides Dshi_0617 and Dshi_0618 are separated by 44 nucleotides Dshi_0618 and Dshi_0619 are separated by 228 nucleotides
Dshi_0615: Dshi_0615 - orotidine 5'-phosphate decarboxylase (RefSeq), at 607,474 to 608,172
_0615
Dshi_0616: Dshi_0616 - hypothetical protein (RefSeq), at 608,284 to 608,697
_0616
Dshi_0617: Dshi_0617 - ATPase AAA-2 domain protein (RefSeq), at 609,070 to 611,685
_0617
Dshi_0618: Dshi_0618 - hypothetical protein (RefSeq), at 611,730 to 612,320
_0618
Dshi_0619: Dshi_0619 - hypothetical protein (RefSeq), at 612,549 to 612,863
_0619
Position (kb)
609
610
611
612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 608.106 kb on + strand at 608.106 kb on + strand at 608.114 kb on - strand at 608.199 kb on - strand at 608.199 kb on - strand at 608.222 kb on - strand at 608.234 kb on + strand at 608.234 kb on + strand at 608.247 kb on + strand at 608.353 kb on + strand, within Dshi_0616 at 608.370 kb on - strand, within Dshi_0616 at 608.370 kb on - strand, within Dshi_0616 at 608.407 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.451 kb on + strand, within Dshi_0616 at 608.480 kb on - strand, within Dshi_0616 at 608.489 kb on + strand, within Dshi_0616 at 608.589 kb on + strand, within Dshi_0616 at 608.589 kb on + strand, within Dshi_0616 at 608.604 kb on + strand, within Dshi_0616 at 608.617 kb on - strand, within Dshi_0616 at 608.636 kb on - strand, within Dshi_0616 at 608.761 kb on + strand at 608.823 kb on - strand at 608.880 kb on - strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.942 kb on + strand at 608.974 kb on + strand at 608.975 kb on + strand at 609.006 kb on - strand at 609.084 kb on + strand at 609.108 kb on + strand at 609.108 kb on + strand at 609.108 kb on + strand at 609.262 kb on + strand at 609.515 kb on - strand, within Dshi_0617 at 609.573 kb on + strand, within Dshi_0617 at 609.581 kb on - strand, within Dshi_0617 at 609.609 kb on + strand, within Dshi_0617 at 609.628 kb on - strand, within Dshi_0617 at 609.666 kb on + strand, within Dshi_0617 at 609.674 kb on - strand, within Dshi_0617 at 609.684 kb on - strand, within Dshi_0617 at 609.694 kb on + strand, within Dshi_0617 at 609.730 kb on - strand, within Dshi_0617 at 609.730 kb on - strand, within Dshi_0617 at 609.751 kb on + strand, within Dshi_0617 at 609.751 kb on + strand, within Dshi_0617 at 609.797 kb on - strand, within Dshi_0617 at 609.856 kb on - strand, within Dshi_0617 at 609.928 kb on + strand, within Dshi_0617 at 609.949 kb on - strand, within Dshi_0617 at 609.951 kb on + strand, within Dshi_0617 at 609.953 kb on + strand at 609.996 kb on - strand at 610.006 kb on - strand, within Dshi_0617 at 610.006 kb on - strand, within Dshi_0617 at 610.279 kb on + strand, within Dshi_0617 at 610.279 kb on + strand, within Dshi_0617 at 610.292 kb on + strand, within Dshi_0617 at 610.300 kb on - strand, within Dshi_0617 at 610.343 kb on + strand, within Dshi_0617 at 610.379 kb on + strand, within Dshi_0617 at 610.448 kb on + strand, within Dshi_0617 at 610.501 kb on + strand, within Dshi_0617 at 610.512 kb on + strand, within Dshi_0617 at 610.572 kb on + strand, within Dshi_0617 at 610.575 kb on - strand, within Dshi_0617 at 610.580 kb on - strand, within Dshi_0617 at 610.758 kb on - strand, within Dshi_0617 at 610.841 kb on - strand, within Dshi_0617 at 610.905 kb on + strand, within Dshi_0617 at 610.905 kb on + strand, within Dshi_0617 at 611.011 kb on + strand, within Dshi_0617 at 611.019 kb on - strand, within Dshi_0617 at 611.020 kb on - strand, within Dshi_0617 at 611.049 kb on + strand, within Dshi_0617 at 611.155 kb on + strand, within Dshi_0617 at 611.180 kb on + strand, within Dshi_0617 at 611.221 kb on - strand, within Dshi_0617 at 611.262 kb on + strand, within Dshi_0617 at 611.430 kb on - strand at 611.432 kb on + strand at 611.436 kb on + strand at 611.490 kb on - strand at 611.542 kb on + strand at 611.707 kb on + strand at 611.775 kb on + strand at 611.863 kb on + strand, within Dshi_0618 at 611.974 kb on - strand, within Dshi_0618 at 612.296 kb on - strand at 612.376 kb on + strand at 612.383 kb on + strand at 612.391 kb on - strand at 612.391 kb on - strand at 612.442 kb on + strand at 612.526 kb on + strand at 612.527 kb on + strand at 612.600 kb on - strand, within Dshi_0619 at 612.651 kb on - strand, within Dshi_0619 at 612.673 kb on + strand, within Dshi_0619
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 608,106 + -2.1 608,106 + -3.0 608,114 - -2.8 608,199 - -0.5 608,199 - +0.5 608,222 - -1.7 608,234 + -0.1 608,234 + -0.9 608,247 + -2.1 608,353 + Dshi_0616 0.17 -1.0 608,370 - Dshi_0616 0.21 -0.8 608,370 - Dshi_0616 0.21 +0.5 608,407 + Dshi_0616 0.30 +1.0 608,443 + Dshi_0616 0.38 +3.0 608,443 + Dshi_0616 0.38 -1.5 608,443 + Dshi_0616 0.38 -0.7 608,443 + Dshi_0616 0.38 +0.5 608,443 + Dshi_0616 0.38 -0.9 608,451 + Dshi_0616 0.40 +0.5 608,480 - Dshi_0616 0.47 +0.5 608,489 + Dshi_0616 0.50 -0.1 608,589 + Dshi_0616 0.74 +0.4 608,589 + Dshi_0616 0.74 -2.7 608,604 + Dshi_0616 0.77 -0.1 608,617 - Dshi_0616 0.80 -0.6 608,636 - Dshi_0616 0.85 -1.1 608,761 + -0.9 608,823 - -2.8 608,880 - +0.5 608,909 + -1.2 608,909 + -0.8 608,909 + -0.6 608,909 + +0.1 608,909 + +3.1 608,909 + -1.5 608,917 - -0.5 608,917 - -1.7 608,917 - +1.0 608,917 - -1.1 608,917 - +0.5 608,917 - +0.1 608,942 + -0.1 608,974 + +1.5 608,975 + -1.5 609,006 - -0.9 609,084 + +0.5 609,108 + +1.8 609,108 + -0.2 609,108 + +1.8 609,262 + +1.2 609,515 - Dshi_0617 0.17 -1.3 609,573 + Dshi_0617 0.19 -1.2 609,581 - Dshi_0617 0.20 +1.0 609,609 + Dshi_0617 0.21 +0.7 609,628 - Dshi_0617 0.21 -3.1 609,666 + Dshi_0617 0.23 +0.7 609,674 - Dshi_0617 0.23 +1.0 609,684 - Dshi_0617 0.23 -0.5 609,694 + Dshi_0617 0.24 -0.5 609,730 - Dshi_0617 0.25 -1.5 609,730 - Dshi_0617 0.25 -1.0 609,751 + Dshi_0617 0.26 -1.6 609,751 + Dshi_0617 0.26 +0.5 609,797 - Dshi_0617 0.28 -0.3 609,856 - Dshi_0617 0.30 -0.4 609,928 + Dshi_0617 0.33 +1.2 609,949 - Dshi_0617 0.34 -1.5 609,951 + Dshi_0617 0.34 +1.6 609,953 + +0.5 609,996 - +0.5 610,006 - Dshi_0617 0.36 -0.7 610,006 - Dshi_0617 0.36 -2.0 610,279 + Dshi_0617 0.46 -1.7 610,279 + Dshi_0617 0.46 -0.8 610,292 + Dshi_0617 0.47 +1.1 610,300 - Dshi_0617 0.47 -1.2 610,343 + Dshi_0617 0.49 -2.3 610,379 + Dshi_0617 0.50 -1.6 610,448 + Dshi_0617 0.53 -1.5 610,501 + Dshi_0617 0.55 -0.8 610,512 + Dshi_0617 0.55 -0.5 610,572 + Dshi_0617 0.57 -2.7 610,575 - Dshi_0617 0.58 +0.0 610,580 - Dshi_0617 0.58 -0.1 610,758 - Dshi_0617 0.65 +0.0 610,841 - Dshi_0617 0.68 -1.1 610,905 + Dshi_0617 0.70 +0.2 610,905 + Dshi_0617 0.70 -1.6 611,011 + Dshi_0617 0.74 -1.1 611,019 - Dshi_0617 0.75 +0.8 611,020 - Dshi_0617 0.75 -0.7 611,049 + Dshi_0617 0.76 -1.2 611,155 + Dshi_0617 0.80 -0.6 611,180 + Dshi_0617 0.81 -3.1 611,221 - Dshi_0617 0.82 -0.3 611,262 + Dshi_0617 0.84 -1.1 611,430 - -0.9 611,432 + +0.1 611,436 + -0.8 611,490 - +1.0 611,542 + -0.2 611,707 + -1.7 611,775 + -0.7 611,863 + Dshi_0618 0.23 -1.4 611,974 - Dshi_0618 0.41 -1.3 612,296 - -1.8 612,376 + -1.6 612,383 + -3.7 612,391 - -0.4 612,391 - -1.3 612,442 + -0.7 612,526 + -0.8 612,527 + -0.7 612,600 - Dshi_0619 0.16 +0.2 612,651 - Dshi_0619 0.32 +0.9 612,673 + Dshi_0619 0.39 +0.1
Or see this region's nucleotide sequence