Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0600 and Dshi_0601 are separated by 253 nucleotides Dshi_0601 and Dshi_0602 are separated by 183 nucleotides
Dshi_0600: Dshi_0600 - MORN repeat-containing protein (RefSeq), at 592,010 to 593,416
_0600
Dshi_0601: Dshi_0601 - NAD+ synthetase (RefSeq), at 593,670 to 595,343
_0601
Dshi_0602: Dshi_0602 - protein of unknown function DUF1025 (RefSeq), at 595,527 to 595,928
_0602
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 592.886 kb on + strand, within Dshi_0600 at 592.899 kb on + strand, within Dshi_0600 at 592.901 kb on + strand, within Dshi_0600 at 593.047 kb on - strand, within Dshi_0600 at 593.225 kb on - strand, within Dshi_0600 at 593.241 kb on - strand, within Dshi_0600 at 593.259 kb on + strand, within Dshi_0600 at 593.259 kb on + strand, within Dshi_0600 at 593.269 kb on + strand, within Dshi_0600 at 593.269 kb on + strand, within Dshi_0600 at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.286 kb on - strand at 593.366 kb on - strand at 593.387 kb on + strand at 593.409 kb on - strand at 593.435 kb on - strand at 593.498 kb on + strand at 593.520 kb on + strand at 593.528 kb on - strand at 593.565 kb on + strand at 593.573 kb on - strand at 595.289 kb on + strand at 595.504 kb on + strand at 595.519 kb on + strand at 595.529 kb on + strand at 595.625 kb on + strand, within Dshi_0602 at 595.625 kb on + strand, within Dshi_0602 at 595.630 kb on + strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.692 kb on - strand, within Dshi_0602 at 595.697 kb on - strand, within Dshi_0602 at 595.739 kb on + strand, within Dshi_0602 at 595.743 kb on - strand, within Dshi_0602 at 595.747 kb on - strand, within Dshi_0602 at 595.752 kb on - strand, within Dshi_0602 at 595.794 kb on - strand, within Dshi_0602 at 595.797 kb on - strand, within Dshi_0602 at 595.801 kb on + strand, within Dshi_0602 at 595.843 kb on + strand, within Dshi_0602 at 595.884 kb on + strand, within Dshi_0602 at 595.895 kb on + strand at 595.914 kb on - strand at 595.958 kb on + strand at 595.978 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.014 kb on + strand at 596.032 kb on - strand at 596.065 kb on + strand at 596.073 kb on + strand at 596.073 kb on - strand at 596.081 kb on - strand at 596.081 kb on - strand at 596.090 kb on + strand at 596.098 kb on - strand at 596.119 kb on - strand at 596.122 kb on - strand at 596.123 kb on + strand at 596.123 kb on + strand at 596.123 kb on + strand at 596.123 kb on + strand at 596.124 kb on - strand at 596.131 kb on - strand at 596.131 kb on - strand at 596.131 kb on - strand at 596.131 kb on - strand at 596.141 kb on - strand at 596.172 kb on - strand at 596.175 kb on - strand at 596.182 kb on - strand at 596.188 kb on + strand at 596.191 kb on - strand at 596.191 kb on - strand at 596.191 kb on - strand at 596.191 kb on - strand at 596.198 kb on + strand at 596.198 kb on + strand at 596.198 kb on + strand at 596.198 kb on + strand at 596.206 kb on - strand at 596.206 kb on - strand at 596.206 kb on - strand at 596.206 kb on - strand at 596.208 kb on - strand at 596.208 kb on - strand at 596.212 kb on + strand at 596.212 kb on + strand at 596.212 kb on + strand at 596.212 kb on + strand at 596.215 kb on - strand at 596.215 kb on - strand at 596.220 kb on + strand at 596.220 kb on - strand at 596.220 kb on - strand at 596.220 kb on - strand at 596.220 kb on - strand at 596.235 kb on - strand at 596.257 kb on + strand at 596.268 kb on + strand at 596.270 kb on + strand at 596.270 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.278 kb on - strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.288 kb on - strand at 596.288 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.292 kb on - strand at 596.292 kb on - strand at 596.292 kb on - strand at 596.293 kb on + strand at 596.294 kb on + strand at 596.302 kb on + strand at 596.302 kb on - strand at 596.302 kb on - strand at 596.307 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.310 kb on - strand at 596.316 kb on - strand at 596.316 kb on - strand at 596.316 kb on - strand at 596.316 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.329 kb on + strand at 596.337 kb on - strand at 596.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 592,886 + Dshi_0600 0.62 +0.4 592,899 + Dshi_0600 0.63 +1.4 592,901 + Dshi_0600 0.63 -0.6 593,047 - Dshi_0600 0.74 -1.2 593,225 - Dshi_0600 0.86 -0.1 593,241 - Dshi_0600 0.87 -0.3 593,259 + Dshi_0600 0.89 +0.4 593,259 + Dshi_0600 0.89 +2.0 593,269 + Dshi_0600 0.89 +2.5 593,269 + Dshi_0600 0.89 -4.9 593,277 - +0.6 593,277 - -1.2 593,277 - -1.9 593,277 - -0.9 593,277 - +2.2 593,286 - +2.0 593,366 - +0.1 593,387 + -2.7 593,409 - -2.6 593,435 - -1.5 593,498 + -1.2 593,520 + +0.4 593,528 - -2.1 593,565 + +0.4 593,573 - +0.6 595,289 + -1.9 595,504 + -1.2 595,519 + -0.4 595,529 + -2.2 595,625 + Dshi_0602 0.24 -0.6 595,625 + Dshi_0602 0.24 -1.8 595,630 + Dshi_0602 0.26 -3.0 595,633 - Dshi_0602 0.26 -0.6 595,633 - Dshi_0602 0.26 +1.4 595,633 - Dshi_0602 0.26 -2.9 595,633 - Dshi_0602 0.26 -1.6 595,692 - Dshi_0602 0.41 -2.6 595,697 - Dshi_0602 0.42 -1.6 595,739 + Dshi_0602 0.53 -1.8 595,743 - Dshi_0602 0.54 +0.4 595,747 - Dshi_0602 0.55 -0.8 595,752 - Dshi_0602 0.56 -3.2 595,794 - Dshi_0602 0.66 -0.1 595,797 - Dshi_0602 0.67 -3.2 595,801 + Dshi_0602 0.68 -3.8 595,843 + Dshi_0602 0.79 -0.7 595,884 + Dshi_0602 0.89 -1.4 595,895 + +0.0 595,914 - -0.6 595,958 + -1.6 595,978 + +0.4 596,009 + -1.3 596,009 + -1.3 596,009 + -0.6 596,009 + -0.3 596,009 + -2.4 596,014 + -1.9 596,032 - +0.2 596,065 + -2.6 596,073 + +1.8 596,073 - -2.7 596,081 - -2.0 596,081 - -0.6 596,090 + +0.1 596,098 - +0.4 596,119 - -0.3 596,122 - +1.2 596,123 + -1.9 596,123 + +3.4 596,123 + -1.9 596,123 + -0.1 596,124 - -0.6 596,131 - -2.6 596,131 - -1.9 596,131 - +0.9 596,131 - -0.8 596,141 - +0.8 596,172 - +0.9 596,175 - -1.6 596,182 - +0.4 596,188 + -1.4 596,191 - -0.6 596,191 - -2.1 596,191 - -0.1 596,191 - -1.8 596,198 + +3.2 596,198 + -1.2 596,198 + -0.6 596,198 + -0.2 596,206 - +0.1 596,206 - -1.9 596,206 - -2.2 596,206 - +0.9 596,208 - -0.6 596,208 - -0.7 596,212 + +0.4 596,212 + -0.6 596,212 + -0.7 596,212 + -1.9 596,215 - +0.4 596,215 - -2.4 596,220 + -0.6 596,220 - +0.9 596,220 - -0.7 596,220 - -0.8 596,220 - +0.4 596,235 - +1.8 596,257 + -1.9 596,268 + -0.7 596,270 + +1.4 596,270 + -1.0 596,275 + -2.7 596,275 + -1.6 596,275 + +0.3 596,275 + +1.3 596,275 + -2.1 596,275 + -1.4 596,275 + -2.4 596,275 + +0.4 596,275 + +0.4 596,275 + -1.4 596,275 + -2.1 596,278 - -1.6 596,283 + -1.1 596,283 + -1.3 596,283 + -2.1 596,283 + +0.2 596,283 + +3.0 596,283 + -1.2 596,283 + -1.9 596,283 + -1.3 596,283 + +0.6 596,283 + -1.1 596,283 - -2.4 596,283 - -3.3 596,283 - -1.6 596,283 - +1.4 596,283 - -1.6 596,283 - -1.6 596,283 - -0.4 596,283 - -1.2 596,283 - +0.8 596,283 - +0.4 596,283 - -2.0 596,283 - -2.4 596,283 - +0.6 596,283 - +1.0 596,283 - -1.3 596,283 - +0.4 596,283 - -1.3 596,283 - -1.8 596,288 - -3.5 596,288 - +0.4 596,291 - -1.7 596,291 - +2.0 596,291 - +0.4 596,291 - -0.1 596,291 - +0.4 596,291 - -1.6 596,291 - -1.1 596,291 - -1.0 596,291 - +1.6 596,291 - -1.1 596,291 - -0.3 596,291 - -1.6 596,291 - -0.3 596,291 - -1.4 596,291 - -1.9 596,291 - -0.2 596,291 - -1.6 596,291 - +0.9 596,292 - -1.1 596,292 - -0.6 596,292 - -1.6 596,293 + +0.9 596,294 + -2.6 596,302 + -1.9 596,302 - -0.7 596,302 - -2.7 596,307 + -4.7 596,309 + -0.2 596,309 + +3.3 596,309 + -0.8 596,309 + -2.1 596,309 + +0.3 596,310 - -1.9 596,316 - +0.4 596,316 - -0.7 596,316 - +1.4 596,316 - -1.6 596,317 - +0.4 596,317 - -1.4 596,317 - -1.9 596,317 - -1.7 596,317 - +0.0 596,317 - -1.1 596,317 - -3.3 596,317 - -1.9 596,319 + +0.3 596,319 + -0.4 596,319 + -0.6 596,319 + -1.1 596,319 + -2.6 596,327 - -1.0 596,327 - -0.0 596,327 - -4.4 596,327 - -2.4 596,327 - -0.9 596,327 - -0.9 596,329 + -1.4 596,337 - -1.7 596,337 - +0.0
Or see this region's nucleotide sequence