Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0586 and Dshi_0587 overlap by 29 nucleotides Dshi_0587 and Dshi_0588 are separated by 77 nucleotides Dshi_0588 and Dshi_0589 overlap by 4 nucleotides
Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498
_0586
Dshi_0587: Dshi_0587 - putative transcriptional regulator, ArsR family (RefSeq), at 578,470 to 578,814
_0587
Dshi_0588: Dshi_0588 - uracil-DNA glycosylase superfamily (RefSeq), at 578,892 to 579,500
_0588
Dshi_0589: Dshi_0589 - hypothetical protein (RefSeq), at 579,497 to 580,282
_0589
Position (kb) 578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 577.543 kb on + strand at 577.558 kb on - strand, within Dshi_0586 at 577.596 kb on + strand, within Dshi_0586 at 577.615 kb on + strand, within Dshi_0586 at 577.615 kb on + strand, within Dshi_0586 at 577.623 kb on - strand, within Dshi_0586 at 577.644 kb on + strand, within Dshi_0586 at 577.672 kb on - strand, within Dshi_0586 at 577.677 kb on - strand, within Dshi_0586 at 577.709 kb on + strand, within Dshi_0586 at 577.717 kb on - strand, within Dshi_0586 at 577.717 kb on - strand, within Dshi_0586 at 577.717 kb on - strand, within Dshi_0586 at 577.784 kb on - strand, within Dshi_0586 at 577.796 kb on - strand, within Dshi_0586 at 577.869 kb on + strand, within Dshi_0586 at 577.875 kb on + strand, within Dshi_0586 at 577.969 kb on - strand, within Dshi_0586 at 577.974 kb on - strand, within Dshi_0586 at 577.974 kb on - strand, within Dshi_0586 at 578.001 kb on - strand, within Dshi_0586 at 578.073 kb on + strand, within Dshi_0586 at 578.224 kb on - strand, within Dshi_0586 at 578.256 kb on - strand, within Dshi_0586 at 578.324 kb on + strand, within Dshi_0586 at 578.387 kb on + strand, within Dshi_0586 at 578.402 kb on + strand at 578.402 kb on + strand at 578.410 kb on - strand at 578.424 kb on + strand at 578.437 kb on - strand at 578.452 kb on + strand at 578.480 kb on + strand at 578.488 kb on - strand at 578.584 kb on - strand, within Dshi_0587 at 578.628 kb on + strand, within Dshi_0587 at 578.701 kb on - strand, within Dshi_0587 at 578.884 kb on - strand at 579.090 kb on - strand, within Dshi_0588 at 579.109 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.235 kb on + strand, within Dshi_0588 at 579.322 kb on + strand, within Dshi_0588 at 579.418 kb on + strand, within Dshi_0588 at 579.426 kb on - strand, within Dshi_0588 at 579.427 kb on - strand, within Dshi_0588 at 579.488 kb on + strand at 579.488 kb on + strand at 579.488 kb on + strand at 579.522 kb on - strand at 579.633 kb on - strand, within Dshi_0589 at 579.645 kb on + strand, within Dshi_0589 at 579.655 kb on - strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.738 kb on + strand, within Dshi_0589
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 577,543 + -1.1 577,558 - Dshi_0586 0.10 -3.4 577,596 + Dshi_0586 0.14 -1.7 577,615 + Dshi_0586 0.16 -0.4 577,615 + Dshi_0586 0.16 -0.8 577,623 - Dshi_0586 0.16 -0.6 577,644 + Dshi_0586 0.18 -1.5 577,672 - Dshi_0586 0.21 -0.9 577,677 - Dshi_0586 0.21 +3.0 577,709 + Dshi_0586 0.25 -1.4 577,717 - Dshi_0586 0.25 -0.9 577,717 - Dshi_0586 0.25 -0.5 577,717 - Dshi_0586 0.25 -0.2 577,784 - Dshi_0586 0.32 -0.8 577,796 - Dshi_0586 0.33 +0.0 577,869 + Dshi_0586 0.40 +0.2 577,875 + Dshi_0586 0.40 -1.7 577,969 - Dshi_0586 0.49 -1.0 577,974 - Dshi_0586 0.50 -1.4 577,974 - Dshi_0586 0.50 +1.4 578,001 - Dshi_0586 0.52 -1.1 578,073 + Dshi_0586 0.59 -0.5 578,224 - Dshi_0586 0.74 -1.8 578,256 - Dshi_0586 0.77 -2.3 578,324 + Dshi_0586 0.83 -1.9 578,387 + Dshi_0586 0.89 -0.6 578,402 + -1.0 578,402 + -0.7 578,410 - +1.4 578,424 + +0.8 578,437 - -3.5 578,452 + -1.6 578,480 + -0.3 578,488 - -0.0 578,584 - Dshi_0587 0.33 -1.2 578,628 + Dshi_0587 0.46 +0.1 578,701 - Dshi_0587 0.67 -1.0 578,884 - -0.5 579,090 - Dshi_0588 0.33 +0.4 579,109 - Dshi_0588 0.36 +1.7 579,232 - Dshi_0588 0.56 -0.9 579,232 - Dshi_0588 0.56 -0.0 579,232 - Dshi_0588 0.56 -0.6 579,232 - Dshi_0588 0.56 -1.0 579,235 + Dshi_0588 0.56 +0.3 579,322 + Dshi_0588 0.71 -0.2 579,418 + Dshi_0588 0.86 +1.6 579,426 - Dshi_0588 0.88 +0.4 579,427 - Dshi_0588 0.88 -1.2 579,488 + -2.2 579,488 + +0.4 579,488 + +1.4 579,522 - -2.6 579,633 - Dshi_0589 0.17 +3.9 579,645 + Dshi_0589 0.19 -0.9 579,655 - Dshi_0589 0.20 -2.2 579,675 + Dshi_0589 0.23 -2.8 579,675 + Dshi_0589 0.23 -0.2 579,738 + Dshi_0589 0.31 -1.6
Or see this region's nucleotide sequence