Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0525

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0524 and Dshi_0525 are separated by 83 nucleotidesDshi_0525 and Dshi_0526 are separated by 27 nucleotidesDshi_0526 and Dshi_0527 overlap by 4 nucleotides Dshi_0524: Dshi_0524 - aldo/keto reductase (RefSeq), at 508,895 to 509,974 _0524 Dshi_0525: Dshi_0525 - hypothetical protein (RefSeq), at 510,058 to 510,609 _0525 Dshi_0526: Dshi_0526 - Dak phosphatase (RefSeq), at 510,637 to 511,236 _0526 Dshi_0527: Dshi_0527 - Glycerone kinase (RefSeq), at 511,233 to 512,234 _0527 Position (kb) 510 511Strain fitness (log2 ratio) -2 -1 0 1 2 3at 509.074 kb on + strand, within Dshi_0524at 509.082 kb on - strand, within Dshi_0524at 509.138 kb on + strand, within Dshi_0524at 509.145 kb on + strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.170 kb on - strand, within Dshi_0524at 509.182 kb on - strandat 509.229 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.247 kb on - strand, within Dshi_0524at 509.286 kb on + strand, within Dshi_0524at 509.286 kb on + strand, within Dshi_0524at 509.352 kb on + strand, within Dshi_0524at 509.361 kb on + strand, within Dshi_0524at 509.410 kb on + strand, within Dshi_0524at 509.499 kb on + strand, within Dshi_0524at 509.514 kb on - strand, within Dshi_0524at 509.576 kb on - strand, within Dshi_0524at 509.691 kb on + strand, within Dshi_0524at 509.696 kb on + strand, within Dshi_0524at 509.860 kb on - strand, within Dshi_0524at 509.876 kb on + strandat 509.897 kb on + strandat 509.912 kb on + strandat 509.963 kb on + strandat 509.976 kb on - strandat 509.976 kb on - strandat 509.977 kb on + strandat 510.029 kb on - strandat 510.120 kb on - strand, within Dshi_0525at 510.168 kb on + strand, within Dshi_0525at 510.186 kb on + strand, within Dshi_0525at 510.192 kb on + strand, within Dshi_0525at 510.192 kb on + strand, within Dshi_0525at 510.192 kb on + strand, within Dshi_0525at 510.202 kb on + strand, within Dshi_0525at 510.210 kb on - strand, within Dshi_0525at 510.219 kb on - strand, within Dshi_0525at 510.280 kb on - strand, within Dshi_0525at 510.280 kb on - strand, within Dshi_0525at 510.339 kb on + strand, within Dshi_0525at 510.571 kb on + strandat 510.579 kb on - strandat 510.611 kb on - strandat 510.628 kb on + strandat 510.656 kb on - strandat 510.689 kb on - strandat 510.772 kb on + strand, within Dshi_0526at 510.780 kb on - strand, within Dshi_0526at 510.786 kb on + strand, within Dshi_0526at 510.787 kb on - strand, within Dshi_0526at 510.796 kb on + strand, within Dshi_0526at 510.796 kb on + strand, within Dshi_0526at 510.799 kb on - strand, within Dshi_0526at 510.844 kb on + strand, within Dshi_0526at 510.867 kb on + strand, within Dshi_0526at 510.885 kb on - strand, within Dshi_0526at 510.905 kb on + strand, within Dshi_0526at 510.905 kb on + strand, within Dshi_0526at 510.920 kb on + strand, within Dshi_0526at 510.981 kb on - strand, within Dshi_0526at 511.029 kb on + strand, within Dshi_0526at 511.034 kb on + strand, within Dshi_0526at 511.140 kb on + strand, within Dshi_0526at 511.154 kb on + strand, within Dshi_0526at 511.162 kb on - strand, within Dshi_0526at 511.165 kb on + strand, within Dshi_0526at 511.246 kb on - strandat 511.265 kb on - strandat 511.307 kb on + strandat 511.307 kb on + strandat 511.315 kb on - strandat 511.317 kb on - strandat 511.373 kb on - strand, within Dshi_0527at 511.397 kb on + strand, within Dshi_0527at 511.397 kb on + strand, within Dshi_0527at 511.405 kb on - strand, within Dshi_0527at 511.407 kb on + strand, within Dshi_0527at 511.407 kb on + strand, within Dshi_0527at 511.417 kb on + strand, within Dshi_0527at 511.424 kb on - strand, within Dshi_0527at 511.436 kb on + strand, within Dshi_0527at 511.436 kb on + strand, within Dshi_0527at 511.540 kb on + strand, within Dshi_0527at 511.540 kb on - strand, within Dshi_0527at 511.542 kb on + strand, within Dshi_0527at 511.566 kb on + strand, within Dshi_0527at 511.598 kb on - strand, within Dshi_0527

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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509,074 + Dshi_0524 0.17 -0.5
509,082 - Dshi_0524 0.17 +0.2
509,138 + Dshi_0524 0.23 +1.6
509,145 + Dshi_0524 0.23 +0.9
509,153 - Dshi_0524 0.24 +0.3
509,153 - Dshi_0524 0.24 -0.2
509,153 - Dshi_0524 0.24 +0.3
509,170 - Dshi_0524 0.25 -1.1
509,182 - +0.4
509,229 + Dshi_0524 0.31 +0.1
509,239 + Dshi_0524 0.32 -1.1
509,239 + Dshi_0524 0.32 +1.3
509,239 + Dshi_0524 0.32 +2.8
509,247 - Dshi_0524 0.33 +0.4
509,286 + Dshi_0524 0.36 +0.9
509,286 + Dshi_0524 0.36 -1.0
509,352 + Dshi_0524 0.42 +0.8
509,361 + Dshi_0524 0.43 +0.1
509,410 + Dshi_0524 0.48 +1.1
509,499 + Dshi_0524 0.56 +0.7
509,514 - Dshi_0524 0.57 -0.0
509,576 - Dshi_0524 0.63 +0.1
509,691 + Dshi_0524 0.74 -0.8
509,696 + Dshi_0524 0.74 +0.7
509,860 - Dshi_0524 0.89 +0.4
509,876 + +1.6
509,897 + +0.9
509,912 + +0.2
509,963 + -0.7
509,976 - +1.4
509,976 - -0.1
509,977 + +0.6
510,029 - +0.5
510,120 - Dshi_0525 0.11 +0.2
510,168 + Dshi_0525 0.20 -0.1
510,186 + Dshi_0525 0.23 +0.3
510,192 + Dshi_0525 0.24 +0.4
510,192 + Dshi_0525 0.24 +0.2
510,192 + Dshi_0525 0.24 -0.1
510,202 + Dshi_0525 0.26 +2.2
510,210 - Dshi_0525 0.28 -0.9
510,219 - Dshi_0525 0.29 -0.1
510,280 - Dshi_0525 0.40 +0.6
510,280 - Dshi_0525 0.40 +1.4
510,339 + Dshi_0525 0.51 +0.1
510,571 + +0.3
510,579 - +0.4
510,611 - +0.6
510,628 + +0.7
510,656 - +1.4
510,689 - +0.4
510,772 + Dshi_0526 0.23 -1.6
510,780 - Dshi_0526 0.24 +0.7
510,786 + Dshi_0526 0.25 -1.3
510,787 - Dshi_0526 0.25 +0.9
510,796 + Dshi_0526 0.27 -0.8
510,796 + Dshi_0526 0.27 -0.0
510,799 - Dshi_0526 0.27 +0.0
510,844 + Dshi_0526 0.34 +2.9
510,867 + Dshi_0526 0.38 -0.5
510,885 - Dshi_0526 0.41 -0.0
510,905 + Dshi_0526 0.45 -0.3
510,905 + Dshi_0526 0.45 +0.8
510,920 + Dshi_0526 0.47 +0.2
510,981 - Dshi_0526 0.57 +1.3
511,029 + Dshi_0526 0.65 +0.6
511,034 + Dshi_0526 0.66 -0.4
511,140 + Dshi_0526 0.84 -1.9
511,154 + Dshi_0526 0.86 -1.5
511,162 - Dshi_0526 0.88 +0.2
511,165 + Dshi_0526 0.88 -1.1
511,246 - +0.1
511,265 - -1.5
511,307 + -0.1
511,307 + -0.1
511,315 - -0.3
511,317 - +0.4
511,373 - Dshi_0527 0.14 -1.0
511,397 + Dshi_0527 0.16 -0.0
511,397 + Dshi_0527 0.16 +0.3
511,405 - Dshi_0527 0.17 +0.5
511,407 + Dshi_0527 0.17 +0.9
511,407 + Dshi_0527 0.17 -0.1
511,417 + Dshi_0527 0.18 +1.4
511,424 - Dshi_0527 0.19 -1.6
511,436 + Dshi_0527 0.20 -0.4
511,436 + Dshi_0527 0.20 -1.8
511,540 + Dshi_0527 0.31 +0.4
511,540 - Dshi_0527 0.31 +2.9
511,542 + Dshi_0527 0.31 +2.8
511,566 + Dshi_0527 0.33 -0.3
511,598 - Dshi_0527 0.36 +0.9

Or see this region's nucleotide sequence