Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0343 and Dshi_0344 are separated by 19 nucleotides Dshi_0344 and Dshi_0345 overlap by 4 nucleotides Dshi_0345 and Dshi_0346 are separated by 6 nucleotides Dshi_0346 and Dshi_0347 are separated by 1 nucleotides Dshi_0347 and Dshi_0348 are separated by 28 nucleotides
Dshi_0343: Dshi_0343 - aminoglycoside phosphotransferase (RefSeq), at 330,412 to 331,401
_0343
Dshi_0344: Dshi_0344 - 16S rRNA processing protein RimM (RefSeq), at 331,421 to 331,921
_0344
Dshi_0345: Dshi_0345 - hypothetical protein (RefSeq), at 331,918 to 332,064
_0345
Dshi_0346: Dshi_0346 - protein of unknown function DUF55 (RefSeq), at 332,071 to 332,535
_0346
Dshi_0347: Dshi_0347 - cob(II)yrinic acid a,c-diamide reductase (RefSeq), at 332,537 to 333,166
_0347
Dshi_0348: Dshi_0348 - ribosomal protein S16 (RefSeq), at 333,195 to 333,587
_0348
Position (kb) 332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 331.104 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.112 kb on - strand, within Dshi_0343 at 331.211 kb on - strand, within Dshi_0343 at 331.294 kb on + strand, within Dshi_0343 at 331.294 kb on + strand, within Dshi_0343 at 331.302 kb on - strand, within Dshi_0343 at 331.394 kb on - strand at 331.427 kb on - strand at 331.635 kb on - strand, within Dshi_0344 at 331.857 kb on + strand, within Dshi_0344 at 331.910 kb on - strand at 332.033 kb on - strand, within Dshi_0345 at 332.099 kb on - strand at 332.314 kb on + strand, within Dshi_0346 at 332.407 kb on - strand, within Dshi_0346 at 332.419 kb on - strand, within Dshi_0346 at 332.621 kb on - strand, within Dshi_0347 at 332.636 kb on - strand, within Dshi_0347 at 332.724 kb on + strand, within Dshi_0347 at 332.724 kb on + strand, within Dshi_0347 at 332.769 kb on + strand, within Dshi_0347 at 332.804 kb on + strand, within Dshi_0347 at 332.881 kb on - strand, within Dshi_0347 at 333.077 kb on + strand, within Dshi_0347 at 333.282 kb on + strand, within Dshi_0348
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 331,104 + Dshi_0343 0.70 -1.4 331,104 + Dshi_0343 0.70 -0.2 331,104 + Dshi_0343 0.70 -2.9 331,112 - Dshi_0343 0.71 -0.2 331,211 - Dshi_0343 0.81 -2.6 331,294 + Dshi_0343 0.89 +0.8 331,294 + Dshi_0343 0.89 +0.3 331,302 - Dshi_0343 0.90 -0.2 331,394 - -0.2 331,427 - +0.0 331,635 - Dshi_0344 0.43 +0.8 331,857 + Dshi_0344 0.87 +0.8 331,910 - -1.8 332,033 - Dshi_0345 0.78 +0.8 332,099 - +0.8 332,314 + Dshi_0346 0.52 +0.8 332,407 - Dshi_0346 0.72 -1.9 332,419 - Dshi_0346 0.75 -2.4 332,621 - Dshi_0347 0.13 -1.2 332,636 - Dshi_0347 0.16 -1.2 332,724 + Dshi_0347 0.30 -1.2 332,724 + Dshi_0347 0.30 +0.8 332,769 + Dshi_0347 0.37 +1.8 332,804 + Dshi_0347 0.42 +0.8 332,881 - Dshi_0347 0.55 -0.2 333,077 + Dshi_0347 0.86 -0.7 333,282 + Dshi_0348 0.22 -0.2
Or see this region's nucleotide sequence