Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0201

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0199 and Dshi_0200 overlap by 4 nucleotidesDshi_0200 and Dshi_0201 overlap by 8 nucleotidesDshi_0201 and Dshi_0202 are separated by 3 nucleotidesDshi_0202 and Dshi_0203 are separated by 68 nucleotides Dshi_0199: Dshi_0199 - signal peptidase I (RefSeq), at 198,319 to 199,104 _0199 Dshi_0200: Dshi_0200 - Ribonuclease III (RefSeq), at 199,101 to 199,790 _0200 Dshi_0201: Dshi_0201 - GTP-binding protein Era (RefSeq), at 199,783 to 200,709 _0201 Dshi_0202: Dshi_0202 - protein of unknown function DUF1491 (RefSeq), at 200,713 to 201,045 _0202 Dshi_0203: Dshi_0203 - DNA repair protein RecO (RefSeq), at 201,114 to 201,839 _0203 Position (kb) 199 200 201Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 200.654 kb on + strandat 200.786 kb on + strand, within Dshi_0202at 200.786 kb on + strand, within Dshi_0202at 200.992 kb on + strand, within Dshi_0202at 201.059 kb on - strandat 201.132 kb on - strandat 201.194 kb on - strand, within Dshi_0203

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
200,654 + -2.6
200,786 + Dshi_0202 0.22 -3.8
200,786 + Dshi_0202 0.22 -1.7
200,992 + Dshi_0202 0.84 +0.9
201,059 - +0.9
201,132 - +1.6
201,194 - Dshi_0203 0.11 +0.2

Or see this region's nucleotide sequence