Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0043 and Dshi_0044 are separated by 300 nucleotides Dshi_0044 and Dshi_0045 are separated by 6 nucleotides Dshi_0045 and Dshi_0046 are separated by 300 nucleotides Dshi_0046 and Dshi_0047 are separated by 279 nucleotides
Dshi_0043: Dshi_0043 - hypothetical protein (RefSeq), at 43,903 to 44,862
_0043
Dshi_0044: Dshi_0044 - hypothetical protein (RefSeq), at 45,163 to 45,633
_0044
Dshi_0045: Dshi_0045 - UspA domain protein (RefSeq), at 45,640 to 46,014
_0045
Dshi_0046: Dshi_0046 - hypothetical protein (RefSeq), at 46,315 to 46,704
_0046
Dshi_0047: Dshi_0047 - hypothetical protein (RefSeq), at 46,984 to 47,406
_0047
Position (kb) 45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 45.114 kb on + strand at 45.122 kb on - strand at 45.156 kb on - strand at 45.156 kb on - strand at 45.199 kb on - strand at 45.204 kb on - strand at 45.235 kb on - strand, within Dshi_0044 at 45.235 kb on - strand, within Dshi_0044 at 45.333 kb on - strand, within Dshi_0044 at 45.360 kb on - strand, within Dshi_0044 at 45.430 kb on - strand, within Dshi_0044 at 45.444 kb on - strand, within Dshi_0044 at 45.451 kb on + strand, within Dshi_0044 at 45.473 kb on - strand, within Dshi_0044 at 45.495 kb on - strand, within Dshi_0044 at 45.540 kb on + strand, within Dshi_0044 at 45.540 kb on + strand, within Dshi_0044 at 45.673 kb on + strand at 45.683 kb on + strand, within Dshi_0045 at 45.691 kb on - strand, within Dshi_0045 at 45.712 kb on + strand, within Dshi_0045 at 45.760 kb on - strand, within Dshi_0045 at 45.783 kb on - strand, within Dshi_0045 at 45.881 kb on + strand, within Dshi_0045 at 45.886 kb on + strand, within Dshi_0045 at 45.971 kb on - strand, within Dshi_0045 at 46.018 kb on - strand at 46.050 kb on - strand at 46.139 kb on - strand at 46.146 kb on + strand at 46.150 kb on - strand at 46.172 kb on - strand at 46.220 kb on + strand at 46.290 kb on - strand at 46.325 kb on + strand at 46.348 kb on - strand at 46.427 kb on + strand, within Dshi_0046 at 46.427 kb on - strand, within Dshi_0046 at 46.453 kb on - strand, within Dshi_0046 at 46.460 kb on + strand, within Dshi_0046 at 46.468 kb on - strand, within Dshi_0046 at 46.512 kb on - strand, within Dshi_0046 at 46.512 kb on - strand, within Dshi_0046 at 46.550 kb on - strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.609 kb on + strand, within Dshi_0046 at 46.617 kb on - strand, within Dshi_0046 at 46.617 kb on - strand, within Dshi_0046 at 46.641 kb on + strand, within Dshi_0046 at 46.641 kb on + strand, within Dshi_0046 at 46.649 kb on - strand, within Dshi_0046 at 46.673 kb on - strand at 46.673 kb on - strand at 46.683 kb on - strand at 46.699 kb on + strand at 46.699 kb on + strand at 46.714 kb on - strand at 46.846 kb on - strand at 46.879 kb on + strand at 46.887 kb on - strand at 46.887 kb on - strand at 46.887 kb on - strand at 46.893 kb on - strand at 46.901 kb on + strand at 46.924 kb on - strand at 46.952 kb on + strand at 46.969 kb on + strand at 46.970 kb on - strand at 46.980 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 45,114 + -1.6 45,122 - -3.1 45,156 - -3.4 45,156 - -1.9 45,199 - -1.1 45,204 - +0.9 45,235 - Dshi_0044 0.15 -1.1 45,235 - Dshi_0044 0.15 -0.8 45,333 - Dshi_0044 0.36 +0.9 45,360 - Dshi_0044 0.42 +0.9 45,430 - Dshi_0044 0.57 -4.6 45,444 - Dshi_0044 0.60 -1.1 45,451 + Dshi_0044 0.61 +0.9 45,473 - Dshi_0044 0.66 -2.8 45,495 - Dshi_0044 0.70 -3.1 45,540 + Dshi_0044 0.80 -2.1 45,540 + Dshi_0044 0.80 -3.4 45,673 + -0.9 45,683 + Dshi_0045 0.11 -2.1 45,691 - Dshi_0045 0.14 -1.5 45,712 + Dshi_0045 0.19 -0.6 45,760 - Dshi_0045 0.32 +1.8 45,783 - Dshi_0045 0.38 +0.9 45,881 + Dshi_0045 0.64 -2.5 45,886 + Dshi_0045 0.66 +0.9 45,971 - Dshi_0045 0.88 -2.1 46,018 - -0.7 46,050 - -3.0 46,139 - -0.4 46,146 + -1.1 46,150 - -1.6 46,172 - -3.4 46,220 + -0.1 46,290 - -1.2 46,325 + -1.8 46,348 - -1.1 46,427 + Dshi_0046 0.29 -1.0 46,427 - Dshi_0046 0.29 -2.1 46,453 - Dshi_0046 0.35 -1.4 46,460 + Dshi_0046 0.37 -0.5 46,468 - Dshi_0046 0.39 +1.4 46,512 - Dshi_0046 0.51 +0.9 46,512 - Dshi_0046 0.51 -1.0 46,550 - Dshi_0046 0.60 -1.2 46,596 + Dshi_0046 0.72 -0.9 46,596 + Dshi_0046 0.72 -1.7 46,596 + Dshi_0046 0.72 -0.8 46,596 + Dshi_0046 0.72 -1.1 46,604 - Dshi_0046 0.74 -0.7 46,604 - Dshi_0046 0.74 -0.6 46,604 - Dshi_0046 0.74 +0.5 46,604 - Dshi_0046 0.74 -0.4 46,609 + Dshi_0046 0.75 -0.6 46,617 - Dshi_0046 0.77 -0.1 46,617 - Dshi_0046 0.77 -1.4 46,641 + Dshi_0046 0.84 -0.4 46,641 + Dshi_0046 0.84 +0.9 46,649 - Dshi_0046 0.86 +2.5 46,673 - -0.5 46,673 - +0.1 46,683 - -0.9 46,699 + -1.6 46,699 + -1.8 46,714 - -0.9 46,846 - -0.5 46,879 + -3.2 46,887 - +0.1 46,887 - -2.6 46,887 - -1.1 46,893 - -3.2 46,901 + +0.4 46,924 - -0.1 46,952 + -0.6 46,969 + -1.6 46,970 - -0.1 46,980 + +0.9
Or see this region's nucleotide sequence