Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_5007

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0904 and Dshi_5007 are separated by 192 nucleotidesDshi_5007 and Dshi_0905 are separated by 13 nucleotidesDshi_0905 and Dshi_0906 overlap by 4 nucleotides Dshi_0904: Dshi_0904 - hypothetical protein (RefSeq), at 927,835 to 928,704 _0904 Dshi_5007: Dshi_5007 - hypothetical protein (RefSeq), at 928,897 to 929,556 _5007 Dshi_0905: Dshi_0905 - protein of unknown function UPF0126 (RefSeq), at 929,570 to 930,199 _0905 Dshi_0906: Dshi_0906 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 930,196 to 930,930 _0906 Position (kb) 928 929 930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 927.935 kb on - strand, within Dshi_0904at 927.991 kb on - strand, within Dshi_0904at 928.025 kb on - strand, within Dshi_0904at 928.073 kb on - strand, within Dshi_0904at 928.094 kb on + strand, within Dshi_0904at 928.102 kb on - strand, within Dshi_0904at 928.130 kb on + strand, within Dshi_0904at 928.134 kb on + strand, within Dshi_0904at 928.173 kb on + strand, within Dshi_0904at 928.236 kb on - strand, within Dshi_0904at 928.332 kb on + strand, within Dshi_0904at 928.487 kb on + strand, within Dshi_0904at 928.533 kb on - strand, within Dshi_0904at 928.559 kb on + strand, within Dshi_0904at 928.629 kb on + strandat 928.679 kb on + strandat 928.686 kb on - strandat 928.686 kb on - strandat 928.711 kb on + strandat 928.757 kb on + strandat 928.793 kb on - strandat 928.818 kb on + strandat 929.245 kb on - strand, within Dshi_5007at 929.383 kb on - strand, within Dshi_5007at 929.550 kb on + strandat 929.580 kb on + strandat 929.679 kb on + strand, within Dshi_0905at 929.684 kb on + strand, within Dshi_0905at 930.151 kb on + strandat 930.151 kb on + strandat 930.159 kb on - strandat 930.252 kb on + strandat 930.299 kb on + strand, within Dshi_0906at 930.350 kb on - strand, within Dshi_0906at 930.374 kb on + strand, within Dshi_0906at 930.474 kb on + strand, within Dshi_0906

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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927,935 - Dshi_0904 0.11 +2.2
927,991 - Dshi_0904 0.18 -1.6
928,025 - Dshi_0904 0.22 -2.5
928,073 - Dshi_0904 0.27 -1.3
928,094 + Dshi_0904 0.30 -1.3
928,102 - Dshi_0904 0.31 +1.1
928,130 + Dshi_0904 0.34 -1.3
928,134 + Dshi_0904 0.34 +0.2
928,173 + Dshi_0904 0.39 -3.8
928,236 - Dshi_0904 0.46 +1.7
928,332 + Dshi_0904 0.57 +1.7
928,487 + Dshi_0904 0.75 -0.9
928,533 - Dshi_0904 0.80 -0.6
928,559 + Dshi_0904 0.83 +1.7
928,629 + -0.1
928,679 + +1.6
928,686 - -0.3
928,686 - +1.7
928,711 + +0.8
928,757 + +0.2
928,793 - -1.7
928,818 + -1.7
929,245 - Dshi_5007 0.53 +2.2
929,383 - Dshi_5007 0.74 +0.7
929,550 + -1.7
929,580 + +0.7
929,679 + Dshi_0905 0.17 -1.8
929,684 + Dshi_0905 0.18 +1.7
930,151 + -0.3
930,151 + +1.7
930,159 - -2.7
930,252 + -0.3
930,299 + Dshi_0906 0.14 -2.2
930,350 - Dshi_0906 0.21 +1.1
930,374 + Dshi_0906 0.24 -0.7
930,474 + Dshi_0906 0.38 +0.3

Or see this region's nucleotide sequence