Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_845 and HP15_846 overlap by 4 nucleotides HP15_846 and HP15_847 are separated by 40 nucleotides HP15_847 and HP15_848 are separated by 112 nucleotides HP15_848 and HP15_849 are separated by 125 nucleotides HP15_849 and HP15_850 are separated by 114 nucleotides
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
HP15_846: HP15_846 - DR1885-like metal-binding protein, at 865,699 to 866,307
_846
HP15_847: HP15_847 - hypothetical protein, at 866,348 to 866,476
_847
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
HP15_849: HP15_849 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 867,545 to 868,237
_849
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
Position (kb) 866
867
868 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 865.591 kb on + strand at 865.630 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.704 kb on - strand at 865.833 kb on + strand, within HP15_846 at 866.072 kb on - strand, within HP15_846 at 866.164 kb on + strand, within HP15_846 at 866.189 kb on + strand, within HP15_846 at 866.372 kb on + strand, within HP15_847 at 866.380 kb on - strand, within HP15_847 at 866.445 kb on + strand, within HP15_847 at 866.558 kb on - strand at 866.633 kb on - strand at 866.641 kb on + strand at 866.744 kb on + strand, within HP15_848 at 866.820 kb on + strand, within HP15_848 at 866.839 kb on - strand, within HP15_848 at 866.875 kb on - strand, within HP15_848 at 866.901 kb on - strand, within HP15_848 at 866.963 kb on + strand, within HP15_848 at 866.966 kb on - strand, within HP15_848 at 866.987 kb on - strand, within HP15_848 at 867.051 kb on + strand, within HP15_848 at 867.232 kb on - strand, within HP15_848 at 867.484 kb on + strand at 867.614 kb on + strand at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.639 kb on - strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.722 kb on + strand, within HP15_849 at 867.762 kb on - strand, within HP15_849 at 867.780 kb on + strand, within HP15_849 at 867.882 kb on - strand, within HP15_849 at 868.073 kb on - strand, within HP15_849 at 868.285 kb on + strand at 868.365 kb on - strand at 868.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 865,591 + -1.3 865,630 + +1.3 865,655 + +0.5 865,655 + -0.2 865,655 + -0.0 865,704 - -1.1 865,833 + HP15_846 0.22 +0.4 866,072 - HP15_846 0.61 +1.5 866,164 + HP15_846 0.76 -0.6 866,189 + HP15_846 0.80 +4.8 866,372 + HP15_847 0.19 -0.4 866,380 - HP15_847 0.25 +2.6 866,445 + HP15_847 0.75 +1.8 866,558 - -0.9 866,633 - +1.1 866,641 + +1.1 866,744 + HP15_848 0.19 -0.4 866,820 + HP15_848 0.28 -0.1 866,839 - HP15_848 0.30 -1.0 866,875 - HP15_848 0.34 +1.6 866,901 - HP15_848 0.38 +2.9 866,963 + HP15_848 0.45 +2.0 866,966 - HP15_848 0.45 -0.5 866,987 - HP15_848 0.48 +1.8 867,051 + HP15_848 0.56 -0.9 867,232 - HP15_848 0.77 -0.5 867,484 + -1.1 867,614 + -0.4 867,631 + HP15_849 0.12 -0.6 867,631 + HP15_849 0.12 +1.8 867,631 + HP15_849 0.12 -1.8 867,631 + HP15_849 0.12 -1.7 867,639 - HP15_849 0.14 +1.2 867,720 + HP15_849 0.25 -2.4 867,720 + HP15_849 0.25 -0.1 867,722 + HP15_849 0.26 -1.4 867,762 - HP15_849 0.31 -0.5 867,780 + HP15_849 0.34 +0.2 867,882 - HP15_849 0.49 +0.3 868,073 - HP15_849 0.76 -0.4 868,285 + +1.6 868,365 - +0.0 868,382 + -0.3
Or see this region's nucleotide sequence