Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_845 and HP15_846 overlap by 4 nucleotides HP15_846 and HP15_847 are separated by 40 nucleotides HP15_847 and HP15_848 are separated by 112 nucleotides
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
HP15_846: HP15_846 - DR1885-like metal-binding protein, at 865,699 to 866,307
_846
HP15_847: HP15_847 - hypothetical protein, at 866,348 to 866,476
_847
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
Position (kb) 865
866
867 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 864.750 kb on + strand, within HP15_845 at 864.769 kb on - strand, within HP15_845 at 864.852 kb on + strand, within HP15_845 at 864.860 kb on - strand, within HP15_845 at 864.990 kb on - strand, within HP15_845 at 865.332 kb on - strand, within HP15_845 at 865.419 kb on - strand, within HP15_845 at 865.524 kb on + strand at 865.586 kb on + strand at 865.591 kb on + strand at 865.630 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.704 kb on - strand at 865.833 kb on + strand, within HP15_846 at 866.072 kb on - strand, within HP15_846 at 866.164 kb on + strand, within HP15_846 at 866.189 kb on + strand, within HP15_846 at 866.372 kb on + strand, within HP15_847 at 866.380 kb on - strand, within HP15_847 at 866.445 kb on + strand, within HP15_847 at 866.558 kb on - strand at 866.633 kb on - strand at 866.641 kb on + strand at 866.744 kb on + strand, within HP15_848 at 866.820 kb on + strand, within HP15_848 at 866.839 kb on - strand, within HP15_848 at 866.875 kb on - strand, within HP15_848 at 866.901 kb on - strand, within HP15_848 at 866.963 kb on + strand, within HP15_848 at 866.966 kb on - strand, within HP15_848 at 866.987 kb on - strand, within HP15_848 at 867.051 kb on + strand, within HP15_848 at 867.232 kb on - strand, within HP15_848
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 864,750 + HP15_845 0.58 +1.5 864,769 - HP15_845 0.59 +1.8 864,852 + HP15_845 0.63 +1.2 864,860 - HP15_845 0.63 +2.1 864,990 - HP15_845 0.69 +1.7 865,332 - HP15_845 0.84 +0.1 865,419 - HP15_845 0.88 +0.2 865,524 + -1.0 865,586 + -0.9 865,591 + -1.3 865,630 + +1.3 865,655 + +0.5 865,655 + -0.2 865,655 + -0.0 865,704 - -1.1 865,833 + HP15_846 0.22 +0.4 866,072 - HP15_846 0.61 +1.5 866,164 + HP15_846 0.76 -0.6 866,189 + HP15_846 0.80 +4.8 866,372 + HP15_847 0.19 -0.4 866,380 - HP15_847 0.25 +2.6 866,445 + HP15_847 0.75 +1.8 866,558 - -0.9 866,633 - +1.1 866,641 + +1.1 866,744 + HP15_848 0.19 -0.4 866,820 + HP15_848 0.28 -0.1 866,839 - HP15_848 0.30 -1.0 866,875 - HP15_848 0.34 +1.6 866,901 - HP15_848 0.38 +2.9 866,963 + HP15_848 0.45 +2.0 866,966 - HP15_848 0.45 -0.5 866,987 - HP15_848 0.48 +1.8 867,051 + HP15_848 0.56 -0.9 867,232 - HP15_848 0.77 -0.5
Or see this region's nucleotide sequence