Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_840 and HP15_841 are separated by 102 nucleotides HP15_841 and HP15_842 are separated by 284 nucleotides HP15_842 and HP15_843 are separated by 40 nucleotides HP15_843 and HP15_844 are separated by 3 nucleotides
HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685
_840
HP15_841: HP15_841 - YaiI/YqxD-like protein, at 860,788 to 861,240
_841
HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097
_842
HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476
_843
HP15_844: HP15_844 - protein containing DUF533, at 862,480 to 863,199
_844
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 860.689 kb on - strand at 860.853 kb on + strand, within HP15_841 at 860.948 kb on + strand, within HP15_841 at 861.019 kb on - strand, within HP15_841 at 861.192 kb on - strand, within HP15_841 at 861.192 kb on - strand, within HP15_841 at 861.199 kb on + strand at 861.276 kb on - strand at 861.361 kb on - strand at 861.614 kb on - strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.654 kb on + strand, within HP15_842 at 861.751 kb on - strand, within HP15_842 at 861.778 kb on + strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 862.068 kb on + strand at 862.154 kb on - strand at 862.198 kb on + strand, within HP15_843 at 862.203 kb on + strand, within HP15_843 at 862.343 kb on - strand, within HP15_843 at 862.522 kb on + strand at 862.573 kb on - strand, within HP15_844 at 862.633 kb on + strand, within HP15_844 at 862.644 kb on + strand, within HP15_844 at 862.665 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.682 kb on - strand, within HP15_844 at 862.796 kb on + strand, within HP15_844 at 862.841 kb on + strand, within HP15_844 at 862.841 kb on - strand, within HP15_844 at 863.000 kb on - strand, within HP15_844 at 863.092 kb on - strand, within HP15_844
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 860,689 - -0.3 860,853 + HP15_841 0.14 +0.1 860,948 + HP15_841 0.35 +0.1 861,019 - HP15_841 0.51 -0.2 861,192 - HP15_841 0.89 +2.0 861,192 - HP15_841 0.89 +0.4 861,199 + -1.1 861,276 - -0.5 861,361 - -1.0 861,614 - HP15_842 0.16 -0.3 861,636 + HP15_842 0.19 -1.5 861,636 + HP15_842 0.19 -0.1 861,654 + HP15_842 0.23 -1.8 861,751 - HP15_842 0.39 +0.4 861,778 + HP15_842 0.44 -2.8 861,999 - HP15_842 0.83 -0.1 861,999 - HP15_842 0.83 +3.4 862,068 + +0.3 862,154 - +1.0 862,198 + HP15_843 0.18 +1.3 862,203 + HP15_843 0.19 +1.4 862,343 - HP15_843 0.60 +0.2 862,522 + -0.8 862,573 - HP15_844 0.13 -0.2 862,633 + HP15_844 0.21 -0.7 862,644 + HP15_844 0.23 -0.7 862,665 - HP15_844 0.26 -0.0 862,670 - HP15_844 0.26 +0.1 862,670 - HP15_844 0.26 +1.7 862,682 - HP15_844 0.28 +0.6 862,796 + HP15_844 0.44 +0.6 862,841 + HP15_844 0.50 +1.6 862,841 - HP15_844 0.50 +0.3 863,000 - HP15_844 0.72 -0.9 863,092 - HP15_844 0.85 -1.4
Or see this region's nucleotide sequence