Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_835 and HP15_836 are separated by 251 nucleotides HP15_836 and HP15_837 overlap by 14 nucleotides
HP15_835: HP15_835 - secreted protein containing glucose sorbosone dehydrogenase domain, at 852,915 to 854,036
_835
HP15_836: HP15_836 - conserved hypothetical protein, at 854,288 to 855,109
_836
HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066
_837
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.323 kb on - strand, within HP15_835 at 853.336 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.537 kb on - strand, within HP15_835 at 853.605 kb on + strand, within HP15_835 at 853.640 kb on + strand, within HP15_835 at 853.658 kb on - strand, within HP15_835 at 853.685 kb on - strand, within HP15_835 at 853.798 kb on - strand, within HP15_835 at 853.919 kb on + strand, within HP15_835 at 854.019 kb on + strand at 854.020 kb on - strand at 854.131 kb on - strand at 854.142 kb on + strand at 854.276 kb on + strand at 854.326 kb on + strand at 854.439 kb on + strand, within HP15_836 at 854.467 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.573 kb on - strand, within HP15_836 at 854.590 kb on + strand, within HP15_836 at 854.608 kb on - strand, within HP15_836 at 854.644 kb on - strand, within HP15_836 at 854.646 kb on + strand, within HP15_836 at 854.894 kb on - strand, within HP15_836 at 855.027 kb on - strand at 855.029 kb on + strand at 855.029 kb on + strand at 855.081 kb on + strand at 855.095 kb on - strand at 855.126 kb on + strand at 855.144 kb on + strand at 855.408 kb on - strand, within HP15_837 at 855.450 kb on - strand, within HP15_837 at 855.472 kb on - strand, within HP15_837 at 855.512 kb on - strand, within HP15_837 at 855.594 kb on - strand, within HP15_837 at 855.769 kb on + strand, within HP15_837 at 855.822 kb on + strand, within HP15_837 at 855.831 kb on - strand, within HP15_837 at 855.848 kb on + strand, within HP15_837 at 855.867 kb on + strand, within HP15_837 at 855.872 kb on + strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.880 kb on - strand, within HP15_837 at 855.880 kb on - strand, within HP15_837 at 855.966 kb on - strand, within HP15_837 at 855.990 kb on - strand, within HP15_837 at 856.023 kb on + strand, within HP15_837 at 856.031 kb on - strand, within HP15_837 at 856.093 kb on - strand, within HP15_837
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 853,323 - HP15_835 0.36 +1.5 853,336 - HP15_835 0.38 -0.1 853,503 - HP15_835 0.52 +1.5 853,503 - HP15_835 0.52 +1.8 853,537 - HP15_835 0.55 -0.8 853,605 + HP15_835 0.61 -1.1 853,640 + HP15_835 0.65 +0.6 853,658 - HP15_835 0.66 -0.4 853,685 - HP15_835 0.69 -0.4 853,798 - HP15_835 0.79 +2.4 853,919 + HP15_835 0.89 -1.2 854,019 + +1.6 854,020 - +2.0 854,131 - +1.4 854,142 + -0.6 854,276 + -0.8 854,326 + -0.1 854,439 + HP15_836 0.18 +0.2 854,467 - HP15_836 0.22 +1.6 854,524 - HP15_836 0.29 +0.6 854,524 - HP15_836 0.29 +1.3 854,573 - HP15_836 0.35 +0.2 854,590 + HP15_836 0.37 -0.4 854,608 - HP15_836 0.39 -0.7 854,644 - HP15_836 0.43 +0.6 854,646 + HP15_836 0.44 +2.2 854,894 - HP15_836 0.74 +2.2 855,027 - +1.0 855,029 + -0.4 855,029 + -0.8 855,081 + -0.3 855,095 - -1.2 855,126 + -2.7 855,144 + +0.4 855,408 - HP15_837 0.16 -1.7 855,450 - HP15_837 0.18 +0.6 855,472 - HP15_837 0.19 +0.9 855,512 - HP15_837 0.21 -0.6 855,594 - HP15_837 0.25 +1.7 855,769 + HP15_837 0.34 -0.8 855,822 + HP15_837 0.37 -0.3 855,831 - HP15_837 0.37 -0.1 855,848 + HP15_837 0.38 -0.8 855,867 + HP15_837 0.39 -0.7 855,872 + HP15_837 0.39 +0.0 855,875 - HP15_837 0.40 +0.7 855,875 - HP15_837 0.40 +0.1 855,875 - HP15_837 0.40 -0.3 855,875 - HP15_837 0.40 +2.3 855,880 - HP15_837 0.40 -1.7 855,880 - HP15_837 0.40 -0.6 855,966 - HP15_837 0.44 +1.6 855,990 - HP15_837 0.45 +0.2 856,023 + HP15_837 0.47 +2.4 856,031 - HP15_837 0.47 +1.3 856,093 - HP15_837 0.51 +0.7
Or see this region's nucleotide sequence