Strain Fitness in Marinobacter adhaerens HP15 around HP15_479

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_478 and HP15_479 are separated by 136 nucleotidesHP15_479 and HP15_480 overlap by 8 nucleotides HP15_478: HP15_478 - type 4 fimbrial biogenesis protein PilQ, at 488,202 to 490,268 _478 HP15_479: HP15_479 - shikimate kinase I, at 490,405 to 490,971 _479 HP15_480: HP15_480 - 3-dehydroquinate synthase, at 490,964 to 492,058 _480 Position (kb) 490 491Strain fitness (log2 ratio) -1 0 1at 489.522 kb on + strand, within HP15_478at 489.700 kb on + strand, within HP15_478at 489.829 kb on - strand, within HP15_478at 489.860 kb on - strand, within HP15_478at 490.206 kb on - strandat 490.270 kb on - strandat 490.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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489,522 + HP15_478 0.64 -0.9
489,700 + HP15_478 0.72 +1.3
489,829 - HP15_478 0.79 -0.2
489,860 - HP15_478 0.80 -0.7
490,206 - +0.2
490,270 - +0.3
490,384 + +0.9

Or see this region's nucleotide sequence