Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g58

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g57 and HP15_p187g58 overlap by 1 nucleotidesHP15_p187g58 and HP15_p187g59 are separated by 248 nucleotides HP15_p187g57: HP15_p187g57 - protein containing glycosyl transferase group 1 domain, at 50,123 to 51,394 _p187g57 HP15_p187g58: HP15_p187g58 - protein containing glycosyl transferase group 1 domain, at 51,394 to 52,509 _p187g58 HP15_p187g59: HP15_p187g59 - glycosyl transferase, group 1, at 52,758 to 53,807 _p187g59 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.465 kb on - strand, within HP15_p187g57at 50.476 kb on + strand, within HP15_p187g57at 50.476 kb on + strand, within HP15_p187g57at 50.579 kb on - strand, within HP15_p187g57at 50.580 kb on - strand, within HP15_p187g57at 50.706 kb on + strand, within HP15_p187g57at 50.714 kb on - strand, within HP15_p187g57at 50.714 kb on - strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.799 kb on - strand, within HP15_p187g57at 50.799 kb on - strand, within HP15_p187g57at 50.800 kb on - strand, within HP15_p187g57at 50.801 kb on - strand, within HP15_p187g57at 50.832 kb on + strand, within HP15_p187g57at 50.834 kb on + strand, within HP15_p187g57at 50.848 kb on - strand, within HP15_p187g57at 50.907 kb on + strand, within HP15_p187g57at 50.921 kb on - strand, within HP15_p187g57at 50.988 kb on + strand, within HP15_p187g57at 50.996 kb on - strand, within HP15_p187g57at 50.996 kb on - strand, within HP15_p187g57at 50.996 kb on - strand, within HP15_p187g57at 50.998 kb on + strand, within HP15_p187g57at 51.031 kb on - strand, within HP15_p187g57at 51.031 kb on - strand, within HP15_p187g57at 51.032 kb on + strand, within HP15_p187g57at 51.032 kb on + strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.070 kb on - strand, within HP15_p187g57at 51.144 kb on - strand, within HP15_p187g57at 51.145 kb on + strand, within HP15_p187g57at 51.160 kb on + strand, within HP15_p187g57at 51.225 kb on + strand, within HP15_p187g57at 51.286 kb on - strandat 51.301 kb on - strandat 51.323 kb on + strandat 51.338 kb on + strandat 51.352 kb on + strandat 51.394 kb on - strandat 51.398 kb on + strandat 51.398 kb on + strandat 51.398 kb on + strandat 51.406 kb on - strandat 51.408 kb on + strandat 51.408 kb on + strandat 51.416 kb on - strandat 51.429 kb on + strandat 51.447 kb on - strandat 51.449 kb on + strandat 51.518 kb on - strand, within HP15_p187g58at 51.582 kb on - strand, within HP15_p187g58at 51.682 kb on + strand, within HP15_p187g58at 51.754 kb on + strand, within HP15_p187g58at 51.765 kb on + strand, within HP15_p187g58at 51.765 kb on + strand, within HP15_p187g58at 51.765 kb on + strand, within HP15_p187g58at 51.773 kb on - strand, within HP15_p187g58at 51.804 kb on + strand, within HP15_p187g58at 51.804 kb on + strand, within HP15_p187g58at 51.804 kb on + strand, within HP15_p187g58at 51.805 kb on - strand, within HP15_p187g58at 51.812 kb on - strand, within HP15_p187g58at 51.812 kb on - strand, within HP15_p187g58at 51.812 kb on - strand, within HP15_p187g58at 51.823 kb on + strand, within HP15_p187g58at 51.882 kb on - strand, within HP15_p187g58at 51.893 kb on + strand, within HP15_p187g58at 52.007 kb on + strand, within HP15_p187g58at 52.009 kb on - strand, within HP15_p187g58at 52.035 kb on + strand, within HP15_p187g58at 52.046 kb on + strand, within HP15_p187g58at 52.058 kb on - strand, within HP15_p187g58at 52.086 kb on - strand, within HP15_p187g58at 52.087 kb on - strand, within HP15_p187g58at 52.144 kb on - strand, within HP15_p187g58at 52.144 kb on - strand, within HP15_p187g58at 52.146 kb on + strand, within HP15_p187g58at 52.183 kb on - strand, within HP15_p187g58at 52.222 kb on - strand, within HP15_p187g58at 52.244 kb on + strand, within HP15_p187g58at 52.268 kb on + strand, within HP15_p187g58at 52.268 kb on + strand, within HP15_p187g58at 52.380 kb on + strand, within HP15_p187g58at 52.392 kb on + strand, within HP15_p187g58at 52.436 kb on - strandat 52.445 kb on - strandat 52.468 kb on - strandat 52.468 kb on - strandat 52.562 kb on + strandat 52.572 kb on + strandat 52.580 kb on - strandat 52.609 kb on - strandat 52.697 kb on + strandat 52.777 kb on - strandat 52.807 kb on + strandat 52.807 kb on + strandat 52.835 kb on - strandat 52.853 kb on - strandat 52.957 kb on - strand, within HP15_p187g59at 52.977 kb on + strand, within HP15_p187g59at 53.006 kb on - strand, within HP15_p187g59at 53.010 kb on + strand, within HP15_p187g59at 53.018 kb on - strand, within HP15_p187g59at 53.086 kb on - strand, within HP15_p187g59at 53.157 kb on + strand, within HP15_p187g59at 53.173 kb on - strand, within HP15_p187g59at 53.173 kb on - strand, within HP15_p187g59at 53.189 kb on + strand, within HP15_p187g59at 53.203 kb on + strand, within HP15_p187g59at 53.211 kb on - strand, within HP15_p187g59at 53.213 kb on + strand, within HP15_p187g59at 53.214 kb on + strand, within HP15_p187g59at 53.221 kb on - strand, within HP15_p187g59at 53.221 kb on - strand, within HP15_p187g59at 53.223 kb on + strand, within HP15_p187g59at 53.231 kb on - strand, within HP15_p187g59at 53.288 kb on + strand, within HP15_p187g59at 53.305 kb on - strand, within HP15_p187g59at 53.309 kb on + strand, within HP15_p187g59at 53.334 kb on + strand, within HP15_p187g59at 53.386 kb on - strand, within HP15_p187g59at 53.445 kb on + strand, within HP15_p187g59at 53.448 kb on - strand, within HP15_p187g59at 53.493 kb on - strand, within HP15_p187g59

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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50,465 - HP15_p187g57 0.27 -1.1
50,476 + HP15_p187g57 0.28 +0.0
50,476 + HP15_p187g57 0.28 -1.3
50,579 - HP15_p187g57 0.36 +1.1
50,580 - HP15_p187g57 0.36 -1.0
50,706 + HP15_p187g57 0.46 -3.3
50,714 - HP15_p187g57 0.46 +2.0
50,714 - HP15_p187g57 0.46 +1.9
50,793 + HP15_p187g57 0.53 +0.4
50,793 + HP15_p187g57 0.53 -1.3
50,793 + HP15_p187g57 0.53 -0.7
50,793 + HP15_p187g57 0.53 -0.3
50,799 - HP15_p187g57 0.53 +1.8
50,799 - HP15_p187g57 0.53 +1.0
50,800 - HP15_p187g57 0.53 -0.1
50,801 - HP15_p187g57 0.53 -1.9
50,832 + HP15_p187g57 0.56 +1.7
50,834 + HP15_p187g57 0.56 +0.2
50,848 - HP15_p187g57 0.57 -0.4
50,907 + HP15_p187g57 0.62 -2.0
50,921 - HP15_p187g57 0.63 +1.2
50,988 + HP15_p187g57 0.68 -1.3
50,996 - HP15_p187g57 0.69 +0.0
50,996 - HP15_p187g57 0.69 -0.2
50,996 - HP15_p187g57 0.69 +2.0
50,998 + HP15_p187g57 0.69 +1.5
51,031 - HP15_p187g57 0.71 -1.3
51,031 - HP15_p187g57 0.71 +2.0
51,032 + HP15_p187g57 0.71 -0.2
51,032 + HP15_p187g57 0.71 -3.1
51,040 - HP15_p187g57 0.72 -1.5
51,040 - HP15_p187g57 0.72 -2.8
51,040 - HP15_p187g57 0.72 +1.8
51,040 - HP15_p187g57 0.72 -0.3
51,040 - HP15_p187g57 0.72 -1.2
51,040 - HP15_p187g57 0.72 +2.1
51,070 - HP15_p187g57 0.74 +2.2
51,144 - HP15_p187g57 0.80 -1.1
51,145 + HP15_p187g57 0.80 -2.8
51,160 + HP15_p187g57 0.82 -0.3
51,225 + HP15_p187g57 0.87 -0.6
51,286 - -0.6
51,301 - -2.9
51,323 + -0.9
51,338 + -0.7
51,352 + +2.3
51,394 - -0.4
51,398 + +0.5
51,398 + +1.5
51,398 + -1.7
51,406 - +1.6
51,408 + -0.5
51,408 + +1.5
51,416 - +0.2
51,429 + -0.7
51,447 - +0.8
51,449 + +1.3
51,518 - HP15_p187g58 0.11 +1.8
51,582 - HP15_p187g58 0.17 +1.1
51,682 + HP15_p187g58 0.26 +2.6
51,754 + HP15_p187g58 0.32 +1.8
51,765 + HP15_p187g58 0.33 -1.2
51,765 + HP15_p187g58 0.33 +3.3
51,765 + HP15_p187g58 0.33 -0.5
51,773 - HP15_p187g58 0.34 +1.5
51,804 + HP15_p187g58 0.37 -2.0
51,804 + HP15_p187g58 0.37 +0.9
51,804 + HP15_p187g58 0.37 +0.4
51,805 - HP15_p187g58 0.37 -0.1
51,812 - HP15_p187g58 0.37 -0.6
51,812 - HP15_p187g58 0.37 +0.9
51,812 - HP15_p187g58 0.37 +2.3
51,823 + HP15_p187g58 0.38 +1.9
51,882 - HP15_p187g58 0.44 -0.2
51,893 + HP15_p187g58 0.45 +1.6
52,007 + HP15_p187g58 0.55 +1.6
52,009 - HP15_p187g58 0.55 -0.1
52,035 + HP15_p187g58 0.57 -1.0
52,046 + HP15_p187g58 0.58 -0.8
52,058 - HP15_p187g58 0.59 +0.3
52,086 - HP15_p187g58 0.62 -2.0
52,087 - HP15_p187g58 0.62 +0.0
52,144 - HP15_p187g58 0.67 -2.3
52,144 - HP15_p187g58 0.67 +2.0
52,146 + HP15_p187g58 0.67 -2.9
52,183 - HP15_p187g58 0.71 +1.3
52,222 - HP15_p187g58 0.74 +1.5
52,244 + HP15_p187g58 0.76 -0.1
52,268 + HP15_p187g58 0.78 +0.4
52,268 + HP15_p187g58 0.78 -0.2
52,380 + HP15_p187g58 0.88 +2.1
52,392 + HP15_p187g58 0.89 +1.9
52,436 - -2.0
52,445 - -0.4
52,468 - +0.2
52,468 - +1.4
52,562 + -2.0
52,572 + -2.3
52,580 - +0.4
52,609 - -0.3
52,697 + -1.0
52,777 - -2.3
52,807 + +2.1
52,807 + +1.8
52,835 - -0.6
52,853 - +1.6
52,957 - HP15_p187g59 0.19 -3.4
52,977 + HP15_p187g59 0.21 +0.3
53,006 - HP15_p187g59 0.24 +0.1
53,010 + HP15_p187g59 0.24 +0.0
53,018 - HP15_p187g59 0.25 +1.3
53,086 - HP15_p187g59 0.31 +0.3
53,157 + HP15_p187g59 0.38 -0.8
53,173 - HP15_p187g59 0.40 -0.5
53,173 - HP15_p187g59 0.40 -0.7
53,189 + HP15_p187g59 0.41 -0.7
53,203 + HP15_p187g59 0.42 +0.5
53,211 - HP15_p187g59 0.43 -1.5
53,213 + HP15_p187g59 0.43 -0.3
53,214 + HP15_p187g59 0.43 -0.2
53,221 - HP15_p187g59 0.44 -0.2
53,221 - HP15_p187g59 0.44 -1.4
53,223 + HP15_p187g59 0.44 -1.1
53,231 - HP15_p187g59 0.45 -0.0
53,288 + HP15_p187g59 0.50 +1.2
53,305 - HP15_p187g59 0.52 -0.0
53,309 + HP15_p187g59 0.52 +0.0
53,334 + HP15_p187g59 0.55 +1.9
53,386 - HP15_p187g59 0.60 +3.4
53,445 + HP15_p187g59 0.65 -0.3
53,448 - HP15_p187g59 0.66 -0.1
53,493 - HP15_p187g59 0.70 +1.1

Or see this region's nucleotide sequence