Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g40

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g39 and HP15_p187g40 are separated by 141 nucleotidesHP15_p187g40 and HP15_p187g41 are separated by 259 nucleotidesHP15_p187g41 and HP15_p187g42 are separated by 26 nucleotides HP15_p187g39: HP15_p187g39 - conserved hypothetical protein, secreted, at 32,581 to 33,666 _p187g39 HP15_p187g40: HP15_p187g40 - GGDEF family protein, at 33,808 to 34,683 _p187g40 HP15_p187g41: HP15_p187g41 - hypothetical protein, at 34,943 to 35,161 _p187g41 HP15_p187g42: HP15_p187g42 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing-like protein, at 35,188 to 35,697 _p187g42 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2 3at 32.817 kb on + strand, within HP15_p187g39at 32.832 kb on - strand, within HP15_p187g39at 32.847 kb on + strand, within HP15_p187g39at 32.891 kb on + strand, within HP15_p187g39at 32.891 kb on - strand, within HP15_p187g39at 32.899 kb on - strand, within HP15_p187g39at 32.899 kb on - strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.915 kb on + strand, within HP15_p187g39at 32.915 kb on + strand, within HP15_p187g39at 32.915 kb on + strand, within HP15_p187g39at 32.921 kb on - strand, within HP15_p187g39at 32.921 kb on - strand, within HP15_p187g39at 32.923 kb on - strand, within HP15_p187g39at 32.923 kb on - strand, within HP15_p187g39at 33.020 kb on + strand, within HP15_p187g39at 33.046 kb on - strand, within HP15_p187g39at 33.054 kb on + strand, within HP15_p187g39at 33.104 kb on - strand, within HP15_p187g39at 33.176 kb on + strand, within HP15_p187g39at 33.190 kb on + strand, within HP15_p187g39at 33.227 kb on + strand, within HP15_p187g39at 33.347 kb on - strand, within HP15_p187g39at 33.369 kb on + strand, within HP15_p187g39at 33.393 kb on + strand, within HP15_p187g39at 33.393 kb on + strand, within HP15_p187g39at 33.393 kb on + strand, within HP15_p187g39at 33.401 kb on - strand, within HP15_p187g39at 33.425 kb on + strand, within HP15_p187g39at 33.451 kb on + strand, within HP15_p187g39at 33.459 kb on - strand, within HP15_p187g39at 33.459 kb on - strand, within HP15_p187g39at 33.459 kb on - strand, within HP15_p187g39at 33.532 kb on + strand, within HP15_p187g39at 33.545 kb on - strand, within HP15_p187g39at 33.546 kb on + strand, within HP15_p187g39at 33.591 kb on + strandat 33.599 kb on - strandat 33.599 kb on - strandat 33.821 kb on + strandat 33.824 kb on - strandat 33.824 kb on - strandat 33.865 kb on - strandat 33.865 kb on - strandat 33.887 kb on - strandat 33.889 kb on - strandat 33.907 kb on + strand, within HP15_p187g40at 33.912 kb on + strand, within HP15_p187g40at 33.915 kb on - strand, within HP15_p187g40at 33.920 kb on - strand, within HP15_p187g40at 33.930 kb on + strand, within HP15_p187g40at 33.931 kb on + strand, within HP15_p187g40at 33.932 kb on + strand, within HP15_p187g40at 33.956 kb on + strand, within HP15_p187g40at 33.964 kb on - strand, within HP15_p187g40at 33.964 kb on - strand, within HP15_p187g40at 33.964 kb on - strand, within HP15_p187g40at 33.966 kb on + strand, within HP15_p187g40at 33.966 kb on + strand, within HP15_p187g40at 33.969 kb on - strand, within HP15_p187g40at 33.974 kb on - strand, within HP15_p187g40at 33.998 kb on + strand, within HP15_p187g40at 34.005 kb on + strand, within HP15_p187g40at 34.013 kb on + strand, within HP15_p187g40at 34.020 kb on + strand, within HP15_p187g40at 34.030 kb on + strand, within HP15_p187g40at 34.067 kb on + strand, within HP15_p187g40at 34.067 kb on + strand, within HP15_p187g40at 34.075 kb on + strand, within HP15_p187g40at 34.075 kb on - strand, within HP15_p187g40at 34.083 kb on + strand, within HP15_p187g40at 34.083 kb on - strand, within HP15_p187g40at 34.086 kb on - strand, within HP15_p187g40at 34.097 kb on + strand, within HP15_p187g40at 34.097 kb on + strand, within HP15_p187g40at 34.097 kb on + strand, within HP15_p187g40at 34.112 kb on + strand, within HP15_p187g40at 34.127 kb on + strand, within HP15_p187g40at 34.131 kb on - strand, within HP15_p187g40at 34.135 kb on - strand, within HP15_p187g40at 34.141 kb on + strand, within HP15_p187g40at 34.147 kb on - strand, within HP15_p187g40at 34.149 kb on - strand, within HP15_p187g40at 34.149 kb on - strand, within HP15_p187g40at 34.174 kb on + strand, within HP15_p187g40at 34.188 kb on + strand, within HP15_p187g40at 34.241 kb on + strand, within HP15_p187g40at 34.272 kb on + strand, within HP15_p187g40at 34.273 kb on + strand, within HP15_p187g40at 34.321 kb on + strand, within HP15_p187g40at 34.321 kb on + strand, within HP15_p187g40at 34.329 kb on - strand, within HP15_p187g40at 34.382 kb on - strand, within HP15_p187g40at 34.421 kb on + strand, within HP15_p187g40at 34.441 kb on + strand, within HP15_p187g40at 34.449 kb on - strand, within HP15_p187g40at 34.449 kb on - strand, within HP15_p187g40at 34.451 kb on + strand, within HP15_p187g40at 34.485 kb on - strand, within HP15_p187g40at 34.512 kb on + strand, within HP15_p187g40at 34.519 kb on + strand, within HP15_p187g40at 34.522 kb on + strand, within HP15_p187g40at 34.525 kb on - strand, within HP15_p187g40at 34.581 kb on - strand, within HP15_p187g40at 34.581 kb on - strand, within HP15_p187g40at 34.585 kb on + strand, within HP15_p187g40at 34.609 kb on + strandat 34.609 kb on + strandat 34.609 kb on + strandat 34.609 kb on + strandat 34.612 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.625 kb on + strandat 34.625 kb on + strandat 34.681 kb on - strandat 34.767 kb on + strandat 34.771 kb on + strandat 34.772 kb on + strandat 34.780 kb on - strandat 34.780 kb on - strandat 34.874 kb on + strandat 34.876 kb on + strandat 34.935 kb on + strandat 34.935 kb on + strandat 34.935 kb on + strandat 34.943 kb on - strandat 34.943 kb on - strandat 34.943 kb on - strandat 34.943 kb on - strandat 34.962 kb on - strandat 34.995 kb on - strand, within HP15_p187g41at 35.000 kb on + strand, within HP15_p187g41at 35.008 kb on - strand, within HP15_p187g41at 35.008 kb on - strand, within HP15_p187g41at 35.008 kb on - strand, within HP15_p187g41at 35.032 kb on + strand, within HP15_p187g41at 35.032 kb on + strand, within HP15_p187g41at 35.042 kb on - strand, within HP15_p187g41at 35.064 kb on + strand, within HP15_p187g41at 35.067 kb on + strand, within HP15_p187g41at 35.067 kb on + strand, within HP15_p187g41at 35.070 kb on - strand, within HP15_p187g41at 35.077 kb on - strand, within HP15_p187g41at 35.216 kb on + strandat 35.273 kb on + strand, within HP15_p187g42at 35.273 kb on - strand, within HP15_p187g42at 35.281 kb on - strand, within HP15_p187g42at 35.281 kb on - strand, within HP15_p187g42at 35.281 kb on - strand, within HP15_p187g42at 35.308 kb on + strand, within HP15_p187g42at 35.342 kb on - strand, within HP15_p187g42at 35.344 kb on + strand, within HP15_p187g42at 35.344 kb on + strand, within HP15_p187g42at 35.362 kb on - strand, within HP15_p187g42at 35.362 kb on - strand, within HP15_p187g42at 35.399 kb on + strand, within HP15_p187g42at 35.422 kb on - strand, within HP15_p187g42at 35.450 kb on - strand, within HP15_p187g42at 35.455 kb on - strand, within HP15_p187g42at 35.488 kb on + strand, within HP15_p187g42at 35.496 kb on - strand, within HP15_p187g42at 35.498 kb on + strand, within HP15_p187g42at 35.500 kb on + strand, within HP15_p187g42at 35.506 kb on - strand, within HP15_p187g42at 35.549 kb on + strand, within HP15_p187g42at 35.562 kb on + strand, within HP15_p187g42at 35.574 kb on + strand, within HP15_p187g42at 35.606 kb on + strand, within HP15_p187g42at 35.644 kb on + strand, within HP15_p187g42at 35.651 kb on + strandat 35.658 kb on - strandat 35.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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32,817 + HP15_p187g39 0.22 +0.4
32,832 - HP15_p187g39 0.23 +0.2
32,847 + HP15_p187g39 0.24 -0.8
32,891 + HP15_p187g39 0.29 +1.3
32,891 - HP15_p187g39 0.29 -0.3
32,899 - HP15_p187g39 0.29 +0.6
32,899 - HP15_p187g39 0.29 +1.9
32,913 + HP15_p187g39 0.31 -0.8
32,913 + HP15_p187g39 0.31 -0.7
32,913 + HP15_p187g39 0.31 -0.3
32,913 + HP15_p187g39 0.31 +1.7
32,915 + HP15_p187g39 0.31 +0.2
32,915 + HP15_p187g39 0.31 +0.1
32,915 + HP15_p187g39 0.31 -0.1
32,921 - HP15_p187g39 0.31 +1.3
32,921 - HP15_p187g39 0.31 -1.2
32,923 - HP15_p187g39 0.31 +1.7
32,923 - HP15_p187g39 0.31 -0.3
33,020 + HP15_p187g39 0.40 +0.9
33,046 - HP15_p187g39 0.43 +1.7
33,054 + HP15_p187g39 0.44 -1.2
33,104 - HP15_p187g39 0.48 +1.8
33,176 + HP15_p187g39 0.55 -0.9
33,190 + HP15_p187g39 0.56 -2.0
33,227 + HP15_p187g39 0.59 +0.4
33,347 - HP15_p187g39 0.71 -0.3
33,369 + HP15_p187g39 0.73 -0.1
33,393 + HP15_p187g39 0.75 +0.0
33,393 + HP15_p187g39 0.75 -1.8
33,393 + HP15_p187g39 0.75 +0.7
33,401 - HP15_p187g39 0.76 -1.3
33,425 + HP15_p187g39 0.78 -0.6
33,451 + HP15_p187g39 0.80 +1.2
33,459 - HP15_p187g39 0.81 +1.0
33,459 - HP15_p187g39 0.81 -0.7
33,459 - HP15_p187g39 0.81 -0.2
33,532 + HP15_p187g39 0.88 -0.0
33,545 - HP15_p187g39 0.89 -0.2
33,546 + HP15_p187g39 0.89 +2.4
33,591 + -0.0
33,599 - -0.6
33,599 - +0.1
33,821 + +1.9
33,824 - +2.5
33,824 - -0.8
33,865 - +1.2
33,865 - -0.8
33,887 - -1.3
33,889 - +2.1
33,907 + HP15_p187g40 0.11 -0.7
33,912 + HP15_p187g40 0.12 -0.8
33,915 - HP15_p187g40 0.12 -1.3
33,920 - HP15_p187g40 0.13 +0.1
33,930 + HP15_p187g40 0.14 +1.9
33,931 + HP15_p187g40 0.14 +3.5
33,932 + HP15_p187g40 0.14 -0.7
33,956 + HP15_p187g40 0.17 +2.2
33,964 - HP15_p187g40 0.18 +1.6
33,964 - HP15_p187g40 0.18 +0.4
33,964 - HP15_p187g40 0.18 -0.8
33,966 + HP15_p187g40 0.18 +1.5
33,966 + HP15_p187g40 0.18 -1.0
33,969 - HP15_p187g40 0.18 -0.1
33,974 - HP15_p187g40 0.19 -0.7
33,998 + HP15_p187g40 0.22 +1.1
34,005 + HP15_p187g40 0.22 +0.5
34,013 + HP15_p187g40 0.23 +0.5
34,020 + HP15_p187g40 0.24 +0.5
34,030 + HP15_p187g40 0.25 -1.4
34,067 + HP15_p187g40 0.30 +1.8
34,067 + HP15_p187g40 0.30 +0.1
34,075 + HP15_p187g40 0.30 +0.2
34,075 - HP15_p187g40 0.30 +1.3
34,083 + HP15_p187g40 0.31 +1.6
34,083 - HP15_p187g40 0.31 -0.5
34,086 - HP15_p187g40 0.32 +1.1
34,097 + HP15_p187g40 0.33 -1.4
34,097 + HP15_p187g40 0.33 +0.0
34,097 + HP15_p187g40 0.33 +0.9
34,112 + HP15_p187g40 0.35 +1.8
34,127 + HP15_p187g40 0.36 -2.1
34,131 - HP15_p187g40 0.37 -0.4
34,135 - HP15_p187g40 0.37 +1.3
34,141 + HP15_p187g40 0.38 +1.7
34,147 - HP15_p187g40 0.39 -1.0
34,149 - HP15_p187g40 0.39 -0.7
34,149 - HP15_p187g40 0.39 +2.1
34,174 + HP15_p187g40 0.42 -0.1
34,188 + HP15_p187g40 0.43 +0.3
34,241 + HP15_p187g40 0.49 -0.1
34,272 + HP15_p187g40 0.53 +1.1
34,273 + HP15_p187g40 0.53 +0.5
34,321 + HP15_p187g40 0.59 -0.2
34,321 + HP15_p187g40 0.59 +0.6
34,329 - HP15_p187g40 0.59 +0.3
34,382 - HP15_p187g40 0.66 +1.0
34,421 + HP15_p187g40 0.70 +2.0
34,441 + HP15_p187g40 0.72 -2.1
34,449 - HP15_p187g40 0.73 -1.7
34,449 - HP15_p187g40 0.73 +0.1
34,451 + HP15_p187g40 0.73 +1.9
34,485 - HP15_p187g40 0.77 +1.7
34,512 + HP15_p187g40 0.80 +2.4
34,519 + HP15_p187g40 0.81 +1.7
34,522 + HP15_p187g40 0.82 -1.2
34,525 - HP15_p187g40 0.82 +0.5
34,581 - HP15_p187g40 0.88 -0.5
34,581 - HP15_p187g40 0.88 -0.5
34,585 + HP15_p187g40 0.89 -0.2
34,609 + -1.8
34,609 + -1.0
34,609 + +2.5
34,609 + +1.7
34,612 - +2.5
34,617 - -0.9
34,617 - -1.2
34,625 + +3.1
34,625 + +1.3
34,681 - -2.0
34,767 + -1.1
34,771 + -0.7
34,772 + -2.3
34,780 - +0.2
34,780 - -0.8
34,874 + -1.0
34,876 + -0.6
34,935 + +1.5
34,935 + +0.1
34,935 + -0.5
34,943 - -0.4
34,943 - -0.9
34,943 - -0.3
34,943 - -1.1
34,962 - -1.4
34,995 - HP15_p187g41 0.24 +0.8
35,000 + HP15_p187g41 0.26 -1.1
35,008 - HP15_p187g41 0.30 +1.0
35,008 - HP15_p187g41 0.30 -2.4
35,008 - HP15_p187g41 0.30 -0.5
35,032 + HP15_p187g41 0.41 -0.2
35,032 + HP15_p187g41 0.41 -0.6
35,042 - HP15_p187g41 0.45 +0.1
35,064 + HP15_p187g41 0.55 -2.0
35,067 + HP15_p187g41 0.57 -0.6
35,067 + HP15_p187g41 0.57 +1.7
35,070 - HP15_p187g41 0.58 -1.0
35,077 - HP15_p187g41 0.61 -1.1
35,216 + +0.6
35,273 + HP15_p187g42 0.17 +3.0
35,273 - HP15_p187g42 0.17 +2.6
35,281 - HP15_p187g42 0.18 -0.8
35,281 - HP15_p187g42 0.18 +0.2
35,281 - HP15_p187g42 0.18 -0.6
35,308 + HP15_p187g42 0.24 +1.3
35,342 - HP15_p187g42 0.30 +0.7
35,344 + HP15_p187g42 0.31 +1.4
35,344 + HP15_p187g42 0.31 +1.9
35,362 - HP15_p187g42 0.34 +0.1
35,362 - HP15_p187g42 0.34 -1.1
35,399 + HP15_p187g42 0.41 -0.7
35,422 - HP15_p187g42 0.46 -0.4
35,450 - HP15_p187g42 0.51 -0.3
35,455 - HP15_p187g42 0.52 -0.9
35,488 + HP15_p187g42 0.59 +1.3
35,496 - HP15_p187g42 0.60 +2.2
35,498 + HP15_p187g42 0.61 -0.1
35,500 + HP15_p187g42 0.61 -0.4
35,506 - HP15_p187g42 0.62 -1.1
35,549 + HP15_p187g42 0.71 +1.2
35,562 + HP15_p187g42 0.73 -0.6
35,574 + HP15_p187g42 0.76 +0.2
35,606 + HP15_p187g42 0.82 -0.8
35,644 + HP15_p187g42 0.89 +1.1
35,651 + +1.6
35,658 - -1.1
35,659 - -0.2

Or see this region's nucleotide sequence