Strain Fitness in Marinobacter adhaerens HP15 around HP15_3733

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3732 and HP15_3733 are separated by 59 nucleotidesHP15_3733 and HP15_3734 overlap by 4 nucleotidesHP15_3734 and HP15_3735 are separated by 45 nucleotides HP15_3732: HP15_3732 - metallo-beta-lactamase family protein, at 3,954,097 to 3,955,005 _3732 HP15_3733: HP15_3733 - hypothetical protein, at 3,955,065 to 3,955,175 _3733 HP15_3734: HP15_3734 - conserved hypothetical protein, secreted, at 3,955,172 to 3,955,615 _3734 HP15_3735: HP15_3735 - rhodanese domain protein-like protein, at 3,955,661 to 3,956,224 _3735 Position (kb) 3955 3956Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3954.221 kb on - strand, within HP15_3732at 3954.280 kb on + strand, within HP15_3732at 3954.342 kb on + strand, within HP15_3732at 3954.375 kb on - strand, within HP15_3732at 3954.375 kb on - strand, within HP15_3732at 3954.382 kb on - strand, within HP15_3732at 3954.387 kb on + strand, within HP15_3732at 3954.540 kb on - strand, within HP15_3732at 3954.540 kb on - strand, within HP15_3732at 3954.560 kb on + strand, within HP15_3732at 3954.560 kb on + strand, within HP15_3732at 3954.568 kb on - strand, within HP15_3732at 3954.568 kb on - strand, within HP15_3732at 3954.568 kb on - strand, within HP15_3732at 3954.588 kb on + strand, within HP15_3732at 3954.685 kb on - strand, within HP15_3732at 3954.701 kb on + strand, within HP15_3732at 3954.777 kb on - strand, within HP15_3732at 3954.847 kb on - strand, within HP15_3732at 3954.906 kb on + strand, within HP15_3732at 3954.912 kb on + strand, within HP15_3732at 3954.989 kb on - strandat 3954.990 kb on - strandat 3955.005 kb on + strandat 3955.008 kb on - strandat 3955.078 kb on + strand, within HP15_3733at 3955.210 kb on + strandat 3955.245 kb on + strand, within HP15_3734at 3955.253 kb on - strand, within HP15_3734at 3955.330 kb on + strand, within HP15_3734at 3955.486 kb on + strand, within HP15_3734at 3955.494 kb on - strand, within HP15_3734at 3955.510 kb on - strand, within HP15_3734at 3955.550 kb on - strand, within HP15_3734at 3955.636 kb on - strandat 3955.648 kb on + strandat 3955.648 kb on - strandat 3955.692 kb on + strandat 3955.698 kb on + strandat 3955.706 kb on - strandat 3955.814 kb on - strand, within HP15_3735at 3955.902 kb on + strand, within HP15_3735at 3956.115 kb on - strand, within HP15_3735at 3956.115 kb on - strand, within HP15_3735at 3956.128 kb on - strand, within HP15_3735at 3956.150 kb on - strand, within HP15_3735

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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3,954,221 - HP15_3732 0.14 +1.8
3,954,280 + HP15_3732 0.20 -0.8
3,954,342 + HP15_3732 0.27 -0.5
3,954,375 - HP15_3732 0.31 -2.0
3,954,375 - HP15_3732 0.31 -0.3
3,954,382 - HP15_3732 0.31 +1.9
3,954,387 + HP15_3732 0.32 +2.0
3,954,540 - HP15_3732 0.49 +1.9
3,954,540 - HP15_3732 0.49 -0.1
3,954,560 + HP15_3732 0.51 +1.6
3,954,560 + HP15_3732 0.51 -0.8
3,954,568 - HP15_3732 0.52 +2.0
3,954,568 - HP15_3732 0.52 +2.1
3,954,568 - HP15_3732 0.52 +1.4
3,954,588 + HP15_3732 0.54 +0.1
3,954,685 - HP15_3732 0.65 +1.3
3,954,701 + HP15_3732 0.66 +2.5
3,954,777 - HP15_3732 0.75 +2.6
3,954,847 - HP15_3732 0.83 +1.2
3,954,906 + HP15_3732 0.89 -2.1
3,954,912 + HP15_3732 0.90 +0.8
3,954,989 - +3.4
3,954,990 - +0.1
3,955,005 + +1.6
3,955,008 - -0.5
3,955,078 + HP15_3733 0.12 -1.6
3,955,210 + -1.6
3,955,245 + HP15_3734 0.16 +0.6
3,955,253 - HP15_3734 0.18 -0.2
3,955,330 + HP15_3734 0.36 +1.0
3,955,486 + HP15_3734 0.71 +1.7
3,955,494 - HP15_3734 0.73 -1.3
3,955,510 - HP15_3734 0.76 +1.5
3,955,550 - HP15_3734 0.85 +0.6
3,955,636 - +1.5
3,955,648 + +0.6
3,955,648 - +0.3
3,955,692 + -1.1
3,955,698 + -0.1
3,955,706 - -1.0
3,955,814 - HP15_3735 0.27 +2.1
3,955,902 + HP15_3735 0.43 +1.6
3,956,115 - HP15_3735 0.80 +1.7
3,956,115 - HP15_3735 0.80 +2.3
3,956,128 - HP15_3735 0.83 -0.9
3,956,150 - HP15_3735 0.87 -0.4

Or see this region's nucleotide sequence