Strain Fitness in Marinobacter adhaerens HP15 around HP15_2771

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2770 and HP15_2771 are separated by 0 nucleotidesHP15_2771 and HP15_2772 are separated by 41 nucleotides HP15_2770: HP15_2770 - permease for cytosine/purines uracil thiamine allantoin, at 2,923,117 to 2,924,400 _2770 HP15_2771: HP15_2771 - DNA-binding protein, at 2,924,401 to 2,925,024 _2771 HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310 _2772 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -2 -1 0 1 2at 2923.467 kb on - strand, within HP15_2770at 2923.559 kb on + strand, within HP15_2770at 2923.590 kb on + strand, within HP15_2770at 2923.599 kb on + strand, within HP15_2770at 2923.641 kb on + strand, within HP15_2770at 2923.691 kb on + strand, within HP15_2770at 2923.691 kb on + strand, within HP15_2770at 2923.696 kb on + strand, within HP15_2770at 2923.699 kb on - strand, within HP15_2770at 2923.737 kb on + strand, within HP15_2770at 2923.849 kb on + strand, within HP15_2770at 2923.858 kb on + strand, within HP15_2770at 2923.858 kb on + strand, within HP15_2770at 2923.863 kb on + strand, within HP15_2770at 2923.871 kb on + strand, within HP15_2770at 2923.895 kb on + strand, within HP15_2770at 2923.919 kb on - strand, within HP15_2770at 2923.929 kb on - strand, within HP15_2770at 2923.975 kb on + strand, within HP15_2770at 2923.975 kb on + strand, within HP15_2770at 2923.983 kb on - strand, within HP15_2770at 2923.988 kb on - strand, within HP15_2770at 2923.990 kb on + strand, within HP15_2770at 2923.990 kb on + strand, within HP15_2770at 2924.025 kb on - strand, within HP15_2770at 2924.085 kb on - strand, within HP15_2770at 2924.206 kb on - strand, within HP15_2770at 2924.213 kb on + strand, within HP15_2770at 2924.283 kb on - strandat 2924.323 kb on + strandat 2924.331 kb on - strandat 2924.423 kb on + strandat 2924.423 kb on + strandat 2924.430 kb on - strandat 2924.430 kb on - strandat 2924.495 kb on + strand, within HP15_2771at 2924.532 kb on + strand, within HP15_2771at 2924.611 kb on - strand, within HP15_2771at 2924.676 kb on + strand, within HP15_2771at 2924.684 kb on + strand, within HP15_2771at 2924.697 kb on + strand, within HP15_2771at 2924.738 kb on - strand, within HP15_2771at 2924.738 kb on - strand, within HP15_2771at 2924.738 kb on - strand, within HP15_2771at 2924.786 kb on + strand, within HP15_2771at 2924.824 kb on - strand, within HP15_2771at 2924.875 kb on + strand, within HP15_2771at 2924.992 kb on + strandat 2925.398 kb on + strand, within HP15_2772at 2925.423 kb on + strand, within HP15_2772at 2925.431 kb on - strand, within HP15_2772at 2925.460 kb on + strand, within HP15_2772at 2925.580 kb on + strand, within HP15_2772at 2925.616 kb on - strand, within HP15_2772at 2925.623 kb on + strand, within HP15_2772at 2925.631 kb on - strand, within HP15_2772at 2925.691 kb on - strand, within HP15_2772at 2925.787 kb on + strand, within HP15_2772

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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2,923,467 - HP15_2770 0.27 +1.1
2,923,559 + HP15_2770 0.34 -0.8
2,923,590 + HP15_2770 0.37 +1.9
2,923,599 + HP15_2770 0.38 +1.8
2,923,641 + HP15_2770 0.41 +1.8
2,923,691 + HP15_2770 0.45 -0.5
2,923,691 + HP15_2770 0.45 -1.1
2,923,696 + HP15_2770 0.45 -0.2
2,923,699 - HP15_2770 0.45 -1.9
2,923,737 + HP15_2770 0.48 +1.9
2,923,849 + HP15_2770 0.57 -1.5
2,923,858 + HP15_2770 0.58 -0.8
2,923,858 + HP15_2770 0.58 -1.2
2,923,863 + HP15_2770 0.58 +1.6
2,923,871 + HP15_2770 0.59 -0.6
2,923,895 + HP15_2770 0.61 -0.1
2,923,919 - HP15_2770 0.62 +1.5
2,923,929 - HP15_2770 0.63 +1.9
2,923,975 + HP15_2770 0.67 +1.2
2,923,975 + HP15_2770 0.67 +2.5
2,923,983 - HP15_2770 0.67 -0.5
2,923,988 - HP15_2770 0.68 +1.8
2,923,990 + HP15_2770 0.68 -0.3
2,923,990 + HP15_2770 0.68 -0.5
2,924,025 - HP15_2770 0.71 -0.5
2,924,085 - HP15_2770 0.75 +0.0
2,924,206 - HP15_2770 0.85 -0.1
2,924,213 + HP15_2770 0.85 +1.0
2,924,283 - +1.6
2,924,323 + -0.6
2,924,331 - -0.1
2,924,423 + -0.2
2,924,423 + -1.3
2,924,430 - +1.8
2,924,430 - +1.8
2,924,495 + HP15_2771 0.15 -0.2
2,924,532 + HP15_2771 0.21 +0.2
2,924,611 - HP15_2771 0.34 -0.6
2,924,676 + HP15_2771 0.44 +1.6
2,924,684 + HP15_2771 0.45 -1.2
2,924,697 + HP15_2771 0.47 +1.9
2,924,738 - HP15_2771 0.54 +0.1
2,924,738 - HP15_2771 0.54 -2.3
2,924,738 - HP15_2771 0.54 -0.2
2,924,786 + HP15_2771 0.62 +1.7
2,924,824 - HP15_2771 0.68 -0.5
2,924,875 + HP15_2771 0.76 +1.8
2,924,992 + +1.5
2,925,398 + HP15_2772 0.27 +1.9
2,925,423 + HP15_2772 0.29 -0.4
2,925,431 - HP15_2772 0.29 -0.4
2,925,460 + HP15_2772 0.32 -0.4
2,925,580 + HP15_2772 0.41 -0.8
2,925,616 - HP15_2772 0.44 +1.5
2,925,623 + HP15_2772 0.45 +1.2
2,925,631 - HP15_2772 0.45 -1.8
2,925,691 - HP15_2772 0.50 -0.6
2,925,787 + HP15_2772 0.58 +0.3

Or see this region's nucleotide sequence