Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2614 and HP15_2615 overlap by 4 nucleotides HP15_2615 and HP15_2616 are separated by 113 nucleotides
HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204
_2614
HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887
_2615
HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227
_2616
Position (kb)
2767
2768 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2766.238 kb on + strand, within HP15_2614 at 2766.238 kb on + strand, within HP15_2614 at 2766.246 kb on - strand, within HP15_2614 at 2766.567 kb on + strand, within HP15_2614 at 2766.575 kb on - strand, within HP15_2614 at 2767.094 kb on + strand at 2767.175 kb on + strand at 2767.227 kb on - strand at 2767.292 kb on - strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.307 kb on - strand, within HP15_2615 at 2767.320 kb on - strand, within HP15_2615 at 2767.472 kb on + strand, within HP15_2615 at 2767.722 kb on + strand, within HP15_2615 at 2767.758 kb on - strand, within HP15_2615 at 2767.767 kb on + strand, within HP15_2615 at 2767.832 kb on - strand at 2767.832 kb on - strand at 2767.990 kb on - strand at 2767.990 kb on - strand at 2768.209 kb on + strand, within HP15_2616 at 2768.255 kb on + strand, within HP15_2616 at 2768.327 kb on + strand, within HP15_2616 at 2768.327 kb on + strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.340 kb on - strand, within HP15_2616 at 2768.346 kb on - strand, within HP15_2616 at 2768.400 kb on - strand, within HP15_2616 at 2768.412 kb on - strand, within HP15_2616 at 2768.437 kb on + strand, within HP15_2616 at 2768.472 kb on - strand, within HP15_2616 at 2768.513 kb on - strand, within HP15_2616 at 2768.517 kb on - strand, within HP15_2616 at 2768.537 kb on + strand, within HP15_2616 at 2768.627 kb on + strand, within HP15_2616 at 2768.841 kb on - strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 2,766,238 + HP15_2614 0.27 -1.4 2,766,238 + HP15_2614 0.27 -0.9 2,766,246 - HP15_2614 0.28 -1.5 2,766,567 + HP15_2614 0.52 -1.0 2,766,575 - HP15_2614 0.52 -2.1 2,767,094 + -2.1 2,767,175 + +0.3 2,767,227 - -1.2 2,767,292 - HP15_2615 0.13 +1.6 2,767,299 + HP15_2615 0.14 +1.8 2,767,299 + HP15_2615 0.14 -0.2 2,767,307 - HP15_2615 0.15 -2.6 2,767,320 - HP15_2615 0.17 +1.7 2,767,472 + HP15_2615 0.39 -0.7 2,767,722 + HP15_2615 0.76 -0.6 2,767,758 - HP15_2615 0.81 -1.4 2,767,767 + HP15_2615 0.82 -1.7 2,767,832 - +1.6 2,767,832 - +2.1 2,767,990 - -1.4 2,767,990 - -0.3 2,768,209 + HP15_2616 0.17 +0.4 2,768,255 + HP15_2616 0.21 -0.6 2,768,327 + HP15_2616 0.27 -0.5 2,768,327 + HP15_2616 0.27 -2.4 2,768,335 - HP15_2616 0.27 +1.7 2,768,335 - HP15_2616 0.27 +1.9 2,768,335 - HP15_2616 0.27 -1.0 2,768,340 - HP15_2616 0.28 -2.2 2,768,346 - HP15_2616 0.28 -0.1 2,768,400 - HP15_2616 0.33 +1.2 2,768,412 - HP15_2616 0.33 +1.6 2,768,437 + HP15_2616 0.36 +2.1 2,768,472 - HP15_2616 0.38 +0.2 2,768,513 - HP15_2616 0.42 -0.8 2,768,517 - HP15_2616 0.42 -1.4 2,768,537 + HP15_2616 0.44 -0.4 2,768,627 + HP15_2616 0.51 -0.8 2,768,841 - HP15_2616 0.68 +0.1 2,768,856 + HP15_2616 0.70 +0.1 2,768,856 + HP15_2616 0.70 -1.7 2,768,856 + HP15_2616 0.70 -0.3
Or see this region's nucleotide sequence