Strain Fitness in Marinobacter adhaerens HP15 around HP15_2615

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2614 and HP15_2615 overlap by 4 nucleotidesHP15_2615 and HP15_2616 are separated by 113 nucleotides HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204 _2614 HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887 _2615 HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227 _2616 Position (kb) 2767 2768Strain fitness (log2 ratio) -2 -1 0 1 2at 2766.238 kb on + strand, within HP15_2614at 2766.238 kb on + strand, within HP15_2614at 2766.246 kb on - strand, within HP15_2614at 2766.567 kb on + strand, within HP15_2614at 2766.575 kb on - strand, within HP15_2614at 2767.094 kb on + strandat 2767.175 kb on + strandat 2767.227 kb on - strandat 2767.292 kb on - strand, within HP15_2615at 2767.299 kb on + strand, within HP15_2615at 2767.299 kb on + strand, within HP15_2615at 2767.307 kb on - strand, within HP15_2615at 2767.320 kb on - strand, within HP15_2615at 2767.472 kb on + strand, within HP15_2615at 2767.722 kb on + strand, within HP15_2615at 2767.758 kb on - strand, within HP15_2615at 2767.767 kb on + strand, within HP15_2615at 2767.832 kb on - strandat 2767.832 kb on - strandat 2767.990 kb on - strandat 2767.990 kb on - strandat 2768.209 kb on + strand, within HP15_2616at 2768.255 kb on + strand, within HP15_2616at 2768.327 kb on + strand, within HP15_2616at 2768.327 kb on + strand, within HP15_2616at 2768.335 kb on - strand, within HP15_2616at 2768.335 kb on - strand, within HP15_2616at 2768.335 kb on - strand, within HP15_2616at 2768.340 kb on - strand, within HP15_2616at 2768.346 kb on - strand, within HP15_2616at 2768.400 kb on - strand, within HP15_2616at 2768.412 kb on - strand, within HP15_2616at 2768.437 kb on + strand, within HP15_2616at 2768.472 kb on - strand, within HP15_2616at 2768.513 kb on - strand, within HP15_2616at 2768.517 kb on - strand, within HP15_2616at 2768.537 kb on + strand, within HP15_2616at 2768.627 kb on + strand, within HP15_2616at 2768.841 kb on - strand, within HP15_2616at 2768.856 kb on + strand, within HP15_2616at 2768.856 kb on + strand, within HP15_2616at 2768.856 kb on + strand, within HP15_2616

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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2,766,238 + HP15_2614 0.27 -1.4
2,766,238 + HP15_2614 0.27 -0.9
2,766,246 - HP15_2614 0.28 -1.5
2,766,567 + HP15_2614 0.52 -1.0
2,766,575 - HP15_2614 0.52 -2.1
2,767,094 + -2.1
2,767,175 + +0.3
2,767,227 - -1.2
2,767,292 - HP15_2615 0.13 +1.6
2,767,299 + HP15_2615 0.14 +1.8
2,767,299 + HP15_2615 0.14 -0.2
2,767,307 - HP15_2615 0.15 -2.6
2,767,320 - HP15_2615 0.17 +1.7
2,767,472 + HP15_2615 0.39 -0.7
2,767,722 + HP15_2615 0.76 -0.6
2,767,758 - HP15_2615 0.81 -1.4
2,767,767 + HP15_2615 0.82 -1.7
2,767,832 - +1.6
2,767,832 - +2.1
2,767,990 - -1.4
2,767,990 - -0.3
2,768,209 + HP15_2616 0.17 +0.4
2,768,255 + HP15_2616 0.21 -0.6
2,768,327 + HP15_2616 0.27 -0.5
2,768,327 + HP15_2616 0.27 -2.4
2,768,335 - HP15_2616 0.27 +1.7
2,768,335 - HP15_2616 0.27 +1.9
2,768,335 - HP15_2616 0.27 -1.0
2,768,340 - HP15_2616 0.28 -2.2
2,768,346 - HP15_2616 0.28 -0.1
2,768,400 - HP15_2616 0.33 +1.2
2,768,412 - HP15_2616 0.33 +1.6
2,768,437 + HP15_2616 0.36 +2.1
2,768,472 - HP15_2616 0.38 +0.2
2,768,513 - HP15_2616 0.42 -0.8
2,768,517 - HP15_2616 0.42 -1.4
2,768,537 + HP15_2616 0.44 -0.4
2,768,627 + HP15_2616 0.51 -0.8
2,768,841 - HP15_2616 0.68 +0.1
2,768,856 + HP15_2616 0.70 +0.1
2,768,856 + HP15_2616 0.70 -1.7
2,768,856 + HP15_2616 0.70 -0.3

Or see this region's nucleotide sequence