Strain Fitness in Marinobacter adhaerens HP15 around HP15_1937

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1935 and HP15_1936 are separated by 16 nucleotidesHP15_1936 and HP15_1937 are separated by 135 nucleotidesHP15_1937 and HP15_1938 overlap by 17 nucleotidesHP15_1938 and HP15_1939 overlap by 4 nucleotides HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914 _1935 HP15_1936: HP15_1936 - conserved hypothetical protein, at 2,055,931 to 2,056,173 _1936 HP15_1937: HP15_1937 - protein containing bacterial bifunctional deaminase-reductase, C-terminal domain, at 2,056,309 to 2,057,181 _1937 HP15_1938: HP15_1938 - conserved hypothetical protein, membrane, at 2,057,165 to 2,058,088 _1938 HP15_1939: HP15_1939 - glycosyl transferase, group 1, at 2,058,085 to 2,060,025 _1939 Position (kb) 2056 2057 2058Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2056.089 kb on - strand, within HP15_1936at 2056.275 kb on + strandat 2056.299 kb on - strandat 2056.321 kb on + strandat 2056.321 kb on + strandat 2056.728 kb on - strand, within HP15_1937at 2056.730 kb on - strand, within HP15_1937at 2056.772 kb on + strand, within HP15_1937at 2056.779 kb on + strand, within HP15_1937at 2056.851 kb on + strand, within HP15_1937at 2056.864 kb on - strand, within HP15_1937at 2056.864 kb on - strand, within HP15_1937at 2056.864 kb on - strand, within HP15_1937at 2056.933 kb on - strand, within HP15_1937at 2057.029 kb on - strand, within HP15_1937at 2057.066 kb on - strand, within HP15_1937at 2057.151 kb on - strandat 2057.371 kb on - strand, within HP15_1938at 2057.390 kb on - strand, within HP15_1938at 2057.410 kb on - strand, within HP15_1938at 2057.429 kb on + strand, within HP15_1938at 2057.464 kb on - strand, within HP15_1938at 2057.614 kb on - strand, within HP15_1938at 2057.634 kb on + strand, within HP15_1938at 2057.734 kb on - strand, within HP15_1938at 2057.734 kb on - strand, within HP15_1938at 2057.736 kb on + strand, within HP15_1938at 2057.744 kb on - strand, within HP15_1938at 2057.813 kb on - strand, within HP15_1938at 2057.816 kb on + strand, within HP15_1938at 2057.856 kb on - strand, within HP15_1938at 2057.861 kb on + strand, within HP15_1938at 2057.861 kb on + strand, within HP15_1938at 2057.869 kb on - strand, within HP15_1938at 2057.879 kb on - strand, within HP15_1938at 2057.897 kb on - strand, within HP15_1938at 2057.985 kb on - strand, within HP15_1938at 2058.088 kb on + strandat 2058.116 kb on - strandat 2058.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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2,056,089 - HP15_1936 0.65 +1.9
2,056,275 + -0.1
2,056,299 - -0.1
2,056,321 + -1.1
2,056,321 + +0.0
2,056,728 - HP15_1937 0.48 +1.0
2,056,730 - HP15_1937 0.48 -0.4
2,056,772 + HP15_1937 0.53 -0.9
2,056,779 + HP15_1937 0.54 -1.1
2,056,851 + HP15_1937 0.62 +3.0
2,056,864 - HP15_1937 0.64 +0.7
2,056,864 - HP15_1937 0.64 +0.2
2,056,864 - HP15_1937 0.64 -0.7
2,056,933 - HP15_1937 0.71 -0.1
2,057,029 - HP15_1937 0.82 +1.1
2,057,066 - HP15_1937 0.87 -1.0
2,057,151 - -1.4
2,057,371 - HP15_1938 0.22 +1.0
2,057,390 - HP15_1938 0.24 -0.0
2,057,410 - HP15_1938 0.27 +0.1
2,057,429 + HP15_1938 0.29 -0.1
2,057,464 - HP15_1938 0.32 -1.7
2,057,614 - HP15_1938 0.49 +0.0
2,057,634 + HP15_1938 0.51 +1.3
2,057,734 - HP15_1938 0.62 -1.0
2,057,734 - HP15_1938 0.62 +1.0
2,057,736 + HP15_1938 0.62 +0.2
2,057,744 - HP15_1938 0.63 +1.0
2,057,813 - HP15_1938 0.70 -1.0
2,057,816 + HP15_1938 0.70 -1.0
2,057,856 - HP15_1938 0.75 -0.3
2,057,861 + HP15_1938 0.75 -0.3
2,057,861 + HP15_1938 0.75 -1.3
2,057,869 - HP15_1938 0.76 +1.6
2,057,879 - HP15_1938 0.77 +2.0
2,057,897 - HP15_1938 0.79 +0.0
2,057,985 - HP15_1938 0.89 +1.8
2,058,088 + +0.7
2,058,116 - +0.2
2,058,174 + -2.2

Or see this region's nucleotide sequence