Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1935 and HP15_1936 are separated by 16 nucleotides HP15_1936 and HP15_1937 are separated by 135 nucleotides HP15_1937 and HP15_1938 overlap by 17 nucleotides HP15_1938 and HP15_1939 overlap by 4 nucleotides
HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914
_1935
HP15_1936: HP15_1936 - conserved hypothetical protein, at 2,055,931 to 2,056,173
_1936
HP15_1937: HP15_1937 - protein containing bacterial bifunctional deaminase-reductase, C-terminal domain, at 2,056,309 to 2,057,181
_1937
HP15_1938: HP15_1938 - conserved hypothetical protein, membrane, at 2,057,165 to 2,058,088
_1938
HP15_1939: HP15_1939 - glycosyl transferase, group 1, at 2,058,085 to 2,060,025
_1939
Position (kb)
2056
2057
2058 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2056.089 kb on - strand, within HP15_1936 at 2056.275 kb on + strand at 2056.299 kb on - strand at 2056.321 kb on + strand at 2056.321 kb on + strand at 2056.728 kb on - strand, within HP15_1937 at 2056.730 kb on - strand, within HP15_1937 at 2056.772 kb on + strand, within HP15_1937 at 2056.779 kb on + strand, within HP15_1937 at 2056.851 kb on + strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.933 kb on - strand, within HP15_1937 at 2057.029 kb on - strand, within HP15_1937 at 2057.066 kb on - strand, within HP15_1937 at 2057.151 kb on - strand at 2057.371 kb on - strand, within HP15_1938 at 2057.390 kb on - strand, within HP15_1938 at 2057.410 kb on - strand, within HP15_1938 at 2057.429 kb on + strand, within HP15_1938 at 2057.464 kb on - strand, within HP15_1938 at 2057.614 kb on - strand, within HP15_1938 at 2057.634 kb on + strand, within HP15_1938 at 2057.734 kb on - strand, within HP15_1938 at 2057.734 kb on - strand, within HP15_1938 at 2057.736 kb on + strand, within HP15_1938 at 2057.744 kb on - strand, within HP15_1938 at 2057.813 kb on - strand, within HP15_1938 at 2057.816 kb on + strand, within HP15_1938 at 2057.856 kb on - strand, within HP15_1938 at 2057.861 kb on + strand, within HP15_1938 at 2057.861 kb on + strand, within HP15_1938 at 2057.869 kb on - strand, within HP15_1938 at 2057.879 kb on - strand, within HP15_1938 at 2057.897 kb on - strand, within HP15_1938 at 2057.985 kb on - strand, within HP15_1938 at 2058.088 kb on + strand at 2058.116 kb on - strand at 2058.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 2,056,089 - HP15_1936 0.65 +1.9 2,056,275 + -0.1 2,056,299 - -0.1 2,056,321 + -1.1 2,056,321 + +0.0 2,056,728 - HP15_1937 0.48 +1.0 2,056,730 - HP15_1937 0.48 -0.4 2,056,772 + HP15_1937 0.53 -0.9 2,056,779 + HP15_1937 0.54 -1.1 2,056,851 + HP15_1937 0.62 +3.0 2,056,864 - HP15_1937 0.64 +0.7 2,056,864 - HP15_1937 0.64 +0.2 2,056,864 - HP15_1937 0.64 -0.7 2,056,933 - HP15_1937 0.71 -0.1 2,057,029 - HP15_1937 0.82 +1.1 2,057,066 - HP15_1937 0.87 -1.0 2,057,151 - -1.4 2,057,371 - HP15_1938 0.22 +1.0 2,057,390 - HP15_1938 0.24 -0.0 2,057,410 - HP15_1938 0.27 +0.1 2,057,429 + HP15_1938 0.29 -0.1 2,057,464 - HP15_1938 0.32 -1.7 2,057,614 - HP15_1938 0.49 +0.0 2,057,634 + HP15_1938 0.51 +1.3 2,057,734 - HP15_1938 0.62 -1.0 2,057,734 - HP15_1938 0.62 +1.0 2,057,736 + HP15_1938 0.62 +0.2 2,057,744 - HP15_1938 0.63 +1.0 2,057,813 - HP15_1938 0.70 -1.0 2,057,816 + HP15_1938 0.70 -1.0 2,057,856 - HP15_1938 0.75 -0.3 2,057,861 + HP15_1938 0.75 -0.3 2,057,861 + HP15_1938 0.75 -1.3 2,057,869 - HP15_1938 0.76 +1.6 2,057,879 - HP15_1938 0.77 +2.0 2,057,897 - HP15_1938 0.79 +0.0 2,057,985 - HP15_1938 0.89 +1.8 2,058,088 + +0.7 2,058,116 - +0.2 2,058,174 + -2.2
Or see this region's nucleotide sequence