Strain Fitness in Shewanella amazonensis SB2B around Sama_1243

Experiment: D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose
1,526,600	+		Sama_1242	0.28	+0.3
1,526,600	+		Sama_1242	0.28	-1.2
1,526,600	+		Sama_1242	0.28	+0.2
1,526,600	+		Sama_1242	0.28	+1.1
1,526,601	-		Sama_1242	0.28	-0.1
1,526,601	-		Sama_1242	0.28	+2.1
1,526,601	-		Sama_1242	0.28	+1.1
1,526,601	-		Sama_1242	0.28	+1.1
1,526,608	+		Sama_1242	0.28	-0.1
1,526,608	+		Sama_1242	0.28	+0.5
1,526,608	+		Sama_1242	0.28	+0.1
1,526,609	-		Sama_1242	0.28	-0.0
1,526,655	+		Sama_1242	0.32	-1.2
1,526,671	+		Sama_1242	0.34	-0.5
1,526,672	-		Sama_1242	0.34	-1.5
1,526,672	-		Sama_1242	0.34	+0.5
1,526,710	+		Sama_1242	0.37	+1.5
1,526,710	+		Sama_1242	0.37	-0.6
1,526,757	+		Sama_1242	0.41	-0.4
1,526,757	+		Sama_1242	0.41	+0.5
1,526,757	+		Sama_1242	0.41	-1.2
1,526,807	-		Sama_1242	0.45	-0.9
1,526,827	+		Sama_1242	0.47	-0.2
1,526,828	-		Sama_1242	0.47	-0.9
1,526,869	+		Sama_1242	0.51	-0.2
1,526,869	+		Sama_1242	0.51	+0.1
1,526,870	-		Sama_1242	0.51	+0.1
1,526,870	-		Sama_1242	0.51	+0.5
1,526,870	-		Sama_1242	0.51	-0.9
1,526,894	+		Sama_1242	0.53	+1.3
1,526,894	+		Sama_1242	0.53	+0.9
1,526,894	+		Sama_1242	0.53	-0.1
1,526,895	-		Sama_1242	0.53	-0.1
1,526,895	-		Sama_1242	0.53	-0.7
1,526,983	+		Sama_1242	0.60	-0.7
1,526,984	-		Sama_1242	0.60	-0.7
1,526,985	+		Sama_1242	0.60	+1.7
1,526,985	+		Sama_1242	0.60	-0.5
1,526,986	-		Sama_1242	0.60	+2.1
1,526,986	-		Sama_1242	0.60	+0.1
1,527,021	+		Sama_1242	0.63	-0.4
1,527,021	+		Sama_1242	0.63	-0.7
1,527,021	+		Sama_1242	0.63	+0.7
1,527,042	+		Sama_1242	0.65	-1.3
1,527,043	-		Sama_1242	0.65	+0.0
1,527,071	-		Sama_1242	0.68	-0.9
1,527,125	+		Sama_1242	0.72	+0.6
1,527,125	+		Sama_1242	0.72	-0.7
1,527,128	+		Sama_1242	0.73	-0.7
1,527,128	+		Sama_1242	0.73	-1.4
1,527,139	+		Sama_1242	0.73	-0.5
1,527,140	-		Sama_1242	0.74	-1.4
1,527,196	+		Sama_1242	0.78	+0.2
1,527,197	-		Sama_1242	0.78	+1.5
1,527,211	+		Sama_1242	0.80	-1.1
1,527,273	+		Sama_1242	0.85	-0.7
1,527,274	-		Sama_1242	0.85	+0.5
1,527,332	+		Sama_1242	0.90	-2.2
1,527,332	+		Sama_1242	0.90	-0.2
1,527,332	+		Sama_1242	0.90	+0.1
1,527,332	+		Sama_1242	0.90	+0.8
1,527,332	+		Sama_1242	0.90	-1.7
1,527,333	-		Sama_1242	0.90	-1.2
1,527,333	-		Sama_1242	0.90	+0.1
1,527,333	-		Sama_1242	0.90	+0.1
1,527,333	-		Sama_1242	0.90	-0.7
1,527,333	-		Sama_1242	0.90	+1.1
1,527,333	-		Sama_1242	0.90	+0.8
1,527,333	-		Sama_1242	0.90	+1.3
1,527,333	-		Sama_1242	0.90	+0.5
1,527,370	+				-2.5
1,527,370	+				-2.1
1,527,370	+				-1.7
1,527,371	-				+1.7
1,527,371	-				-0.4
1,527,470	-				+0.1
1,527,470	-				+0.5
1,527,478	+				+2.8
1,527,478	+				-0.7
1,527,482	+				+0.9
1,527,482	+				-1.9
1,527,483	-				-0.1
1,527,483	-				-0.5
1,527,483	-				-0.3
1,527,488	+				-1.0
1,527,488	+				+0.3
1,527,488	+				-1.2
1,527,489	-				-0.2
1,527,524	+				+2.1
1,527,547	+				-0.1
1,527,547	+				+0.3
1,527,558	+				+1.7
1,527,558	+				+0.1
1,527,558	+				-0.2
1,527,558	+				+2.1
1,527,559	-				-1.6
1,527,559	-				+0.8
1,527,671	-		Sama_1243	0.39	-1.6
1,527,747	+		Sama_1243	0.64	-2.9
1,527,748	-		Sama_1243	0.64	-0.9
1,527,748	-		Sama_1243	0.64	+1.1
1,527,768	-		Sama_1243	0.71	-0.4
1,527,768	-		Sama_1243	0.71	+1.1
1,527,844	+				-1.4
1,527,844	+				-0.7
1,527,857	+				+0.6
1,527,858	-				-0.5
1,527,893	+				+1.1
1,527,894	-				+0.1
1,527,897	+				-1.2
1,527,898	-				+1.5
1,528,119	+				+0.7
1,528,196	+		Sama_1244	0.27	-0.5
1,528,227	+		Sama_1244	0.38	+0.3
1,528,242	+		Sama_1244	0.44	-0.2
1,528,242	+		Sama_1244	0.44	+0.1
1,528,267	-		Sama_1244	0.52	-0.2
1,528,291	+		Sama_1244	0.61	+0.1
1,528,292	-		Sama_1244	0.61	-1.1
1,528,294	+		Sama_1244	0.62	-0.2
1,528,294	+		Sama_1244	0.62	+1.1
1,528,294	+		Sama_1244	0.62	+0.1
1,528,295	-		Sama_1244	0.62	+0.5
1,528,295	-		Sama_1244	0.62	+1.7
1,528,314	+		Sama_1244	0.69	+1.5
1,528,377	+				-0.2
1,528,378	-				-1.9
1,528,378	-				-0.9
1,528,378	-				+0.1
1,528,380	+				-0.2
1,528,380	+				-0.7
1,528,380	+				+0.5
1,528,381	-				+0.5
1,528,402	+				-0.3
1,528,402	+				+0.3
1,528,402	+				-1.8
1,528,402	+				-0.8
1,528,402	+				-1.8
1,528,402	+				+1.1
1,528,403	-				-0.8
1,528,403	-				+1.1
1,528,403	-				-1.1
1,528,403	-				-0.4
1,528,403	-				-1.4
1,528,403	-				+1.1
1,528,403	-				+1.5
1,528,417	+				+0.2
1,528,437	+				+1.3
1,528,438	-				-0.9
1,528,438	-				-1.2
1,528,458	+				-2.2
1,528,458	+				-0.5
1,528,486	-				-0.5
1,528,501	+				-0.6
1,528,589	+		Sama_1245	0.19	-1.4
1,528,595	+		Sama_1245	0.19	+0.3
1,528,595	+		Sama_1245	0.19	-0.2
1,528,595	+		Sama_1245	0.19	+0.3
1,528,596	-		Sama_1245	0.20	-1.4
1,528,598	+		Sama_1245	0.20	+0.5
1,528,599	-		Sama_1245	0.20	-0.1
1,528,645	+		Sama_1245	0.25	-1.1
1,528,645	+		Sama_1245	0.25	-0.0
1,528,645	+		Sama_1245	0.25	-0.8
1,528,646	-		Sama_1245	0.25	-0.5
1,528,646	-		Sama_1245	0.25	-1.4
1,528,681	+		Sama_1245	0.29	-0.9
1,528,681	+		Sama_1245	0.29	-0.9
1,528,681	+		Sama_1245	0.29	-0.6
1,528,682	-		Sama_1245	0.29	-0.7
1,528,689	+		Sama_1245	0.30	+0.3
1,528,712	-		Sama_1245	0.32	-1.2
1,528,800	+		Sama_1245	0.42	-1.3
1,528,800	+		Sama_1245	0.42	+0.9
1,528,800	+		Sama_1245	0.42	-1.4
1,528,800	+		Sama_1245	0.42	-0.2
1,528,800	+		Sama_1245	0.42	-0.5
1,528,800	+		Sama_1245	0.42	-1.3
1,528,800	+		Sama_1245	0.42	-1.4
1,528,801	-		Sama_1245	0.42	-0.3
1,528,801	-		Sama_1245	0.42	-1.8
1,528,801	-		Sama_1245	0.42	+0.9
1,528,811	+		Sama_1245	0.43	-2.1
1,528,857	+		Sama_1245	0.48	+0.5
1,528,857	+		Sama_1245	0.48	-2.4
1,528,858	-		Sama_1245	0.48	-0.6
1,528,858	-		Sama_1245	0.48	-0.2
1,528,858	-		Sama_1245	0.48	+0.8