Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0578 and Sama_0579 are separated by 141 nucleotides Sama_0579 and Sama_0580 are separated by 121 nucleotides
Sama_0578: Sama_0578 - hypothetical protein (RefSeq), at 718,547 to 719,704
_0578
Sama_0579: Sama_0579 - LysR family transcriptional regulator (RefSeq), at 719,846 to 720,757
_0579
Sama_0580: Sama_0580 - acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase (RefSeq), at 720,879 to 725,432
_0580
Position (kb) 719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 718.952 kb on + strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.039 kb on - strand, within Sama_0578 at 719.039 kb on - strand, within Sama_0578 at 719.042 kb on + strand, within Sama_0578 at 719.068 kb on - strand, within Sama_0578 at 719.168 kb on - strand, within Sama_0578 at 719.173 kb on + strand, within Sama_0578 at 719.173 kb on + strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.176 kb on - strand, within Sama_0578 at 719.176 kb on - strand, within Sama_0578 at 719.201 kb on - strand, within Sama_0578 at 719.222 kb on + strand, within Sama_0578 at 719.222 kb on + strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.276 kb on + strand, within Sama_0578 at 719.277 kb on - strand, within Sama_0578 at 719.367 kb on + strand, within Sama_0578 at 719.368 kb on - strand, within Sama_0578 at 719.368 kb on - strand, within Sama_0578 at 719.418 kb on + strand, within Sama_0578 at 719.418 kb on + strand, within Sama_0578 at 719.419 kb on - strand, within Sama_0578 at 719.437 kb on + strand, within Sama_0578 at 719.437 kb on + strand, within Sama_0578 at 719.474 kb on + strand, within Sama_0578 at 719.490 kb on + strand, within Sama_0578 at 719.491 kb on - strand, within Sama_0578 at 719.491 kb on - strand, within Sama_0578 at 719.569 kb on - strand, within Sama_0578 at 719.579 kb on + strand, within Sama_0578 at 719.579 kb on + strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.692 kb on + strand at 719.692 kb on + strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.699 kb on + strand at 719.748 kb on + strand at 719.748 kb on + strand at 719.754 kb on + strand at 719.755 kb on - strand at 719.755 kb on - strand at 719.755 kb on - strand at 719.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 718,952 + Sama_0578 0.35 +0.2 718,953 - Sama_0578 0.35 -0.2 718,953 - Sama_0578 0.35 -0.2 718,953 - Sama_0578 0.35 -0.7 719,038 + Sama_0578 0.42 -0.6 719,038 + Sama_0578 0.42 -0.7 719,038 + Sama_0578 0.42 -0.8 719,039 - Sama_0578 0.42 -0.6 719,039 - Sama_0578 0.42 -0.2 719,042 + Sama_0578 0.43 -1.4 719,068 - Sama_0578 0.45 +0.1 719,168 - Sama_0578 0.54 +0.8 719,173 + Sama_0578 0.54 -0.8 719,173 + Sama_0578 0.54 -0.9 719,174 - Sama_0578 0.54 -0.5 719,174 - Sama_0578 0.54 +0.4 719,174 - Sama_0578 0.54 -0.3 719,174 - Sama_0578 0.54 -1.7 719,175 + Sama_0578 0.54 -2.6 719,175 + Sama_0578 0.54 -0.6 719,175 + Sama_0578 0.54 -0.2 719,175 + Sama_0578 0.54 -1.6 719,176 - Sama_0578 0.54 +0.6 719,176 - Sama_0578 0.54 -0.2 719,201 - Sama_0578 0.56 -0.5 719,222 + Sama_0578 0.58 -0.1 719,222 + Sama_0578 0.58 +1.4 719,223 - Sama_0578 0.58 -0.4 719,223 - Sama_0578 0.58 -0.6 719,223 - Sama_0578 0.58 +0.6 719,223 - Sama_0578 0.58 -1.0 719,276 + Sama_0578 0.63 -1.3 719,277 - Sama_0578 0.63 -0.6 719,367 + Sama_0578 0.71 -0.5 719,368 - Sama_0578 0.71 -0.2 719,368 - Sama_0578 0.71 +0.8 719,418 + Sama_0578 0.75 +1.2 719,418 + Sama_0578 0.75 +0.2 719,419 - Sama_0578 0.75 +0.6 719,437 + Sama_0578 0.77 -0.3 719,437 + Sama_0578 0.77 -0.7 719,474 + Sama_0578 0.80 -0.6 719,490 + Sama_0578 0.81 -0.0 719,491 - Sama_0578 0.82 +0.3 719,491 - Sama_0578 0.82 -0.2 719,569 - Sama_0578 0.88 +0.6 719,579 + Sama_0578 0.89 -1.6 719,579 + Sama_0578 0.89 -0.2 719,580 - Sama_0578 0.89 -0.9 719,580 - Sama_0578 0.89 -0.1 719,580 - Sama_0578 0.89 -1.9 719,580 - Sama_0578 0.89 +2.4 719,692 + -1.0 719,692 + +0.8 719,693 - -0.4 719,693 - +0.2 719,693 - -0.4 719,693 - -1.0 719,693 - -0.9 719,693 - -0.5 719,699 + -0.7 719,748 + -1.2 719,748 + -0.4 719,754 + -0.0 719,755 - +0.3 719,755 - -1.2 719,755 - +0.6 719,847 + -0.7
Or see this region's nucleotide sequence