Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0576 and Sama_0577 are separated by 145 nucleotides Sama_0577 and Sama_0578 are separated by 72 nucleotides Sama_0578 and Sama_0579 are separated by 141 nucleotides
Sama_0576: Sama_0576 - deoxyribonuclease I (RefSeq), at 717,046 to 717,774
_0576
Sama_0577: Sama_0577 - sprT protein, putative (RefSeq), at 717,920 to 718,474
_0577
Sama_0578: Sama_0578 - hypothetical protein (RefSeq), at 718,547 to 719,704
_0578
Sama_0579: Sama_0579 - LysR family transcriptional regulator (RefSeq), at 719,846 to 720,757
_0579
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 717.635 kb on + strand, within Sama_0576 at 717.712 kb on - strand at 717.763 kb on + strand at 717.764 kb on - strand at 717.768 kb on - strand at 717.787 kb on + strand at 717.788 kb on - strand at 717.803 kb on + strand at 717.833 kb on + strand at 717.833 kb on + strand at 717.834 kb on - strand at 717.846 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on - strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.902 kb on + strand at 717.902 kb on + strand at 717.946 kb on - strand at 717.969 kb on + strand at 717.969 kb on + strand at 717.970 kb on - strand at 717.976 kb on + strand, within Sama_0577 at 717.977 kb on - strand, within Sama_0577 at 717.994 kb on + strand, within Sama_0577 at 717.994 kb on + strand, within Sama_0577 at 717.995 kb on - strand, within Sama_0577 at 718.041 kb on + strand, within Sama_0577 at 718.041 kb on + strand, within Sama_0577 at 718.042 kb on - strand, within Sama_0577 at 718.048 kb on + strand, within Sama_0577 at 718.049 kb on - strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.255 kb on + strand, within Sama_0577 at 718.272 kb on + strand, within Sama_0577 at 718.272 kb on + strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.475 kb on - strand at 718.503 kb on + strand at 718.503 kb on + strand at 718.503 kb on + strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.506 kb on + strand at 718.506 kb on + strand at 718.506 kb on + strand at 718.506 kb on + strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.548 kb on + strand at 718.549 kb on - strand at 718.571 kb on + strand at 718.571 kb on + strand at 718.572 kb on - strand at 718.572 kb on - strand at 718.572 kb on - strand at 718.595 kb on + strand at 718.621 kb on - strand at 718.639 kb on + strand at 718.639 kb on + strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.642 kb on - strand at 718.699 kb on - strand, within Sama_0578 at 718.740 kb on - strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.952 kb on + strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.039 kb on - strand, within Sama_0578 at 719.039 kb on - strand, within Sama_0578 at 719.042 kb on + strand, within Sama_0578 at 719.068 kb on - strand, within Sama_0578 at 719.168 kb on - strand, within Sama_0578 at 719.173 kb on + strand, within Sama_0578 at 719.173 kb on + strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.176 kb on - strand, within Sama_0578 at 719.176 kb on - strand, within Sama_0578 at 719.201 kb on - strand, within Sama_0578 at 719.222 kb on + strand, within Sama_0578 at 719.222 kb on + strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.276 kb on + strand, within Sama_0578 at 719.277 kb on - strand, within Sama_0578 at 719.367 kb on + strand, within Sama_0578 at 719.368 kb on - strand, within Sama_0578 at 719.368 kb on - strand, within Sama_0578 at 719.418 kb on + strand, within Sama_0578 at 719.418 kb on + strand, within Sama_0578 at 719.419 kb on - strand, within Sama_0578 at 719.437 kb on + strand, within Sama_0578 at 719.437 kb on + strand, within Sama_0578 at 719.474 kb on + strand, within Sama_0578 at 719.490 kb on + strand, within Sama_0578 at 719.491 kb on - strand, within Sama_0578 at 719.491 kb on - strand, within Sama_0578 at 719.569 kb on - strand, within Sama_0578 at 719.579 kb on + strand, within Sama_0578 at 719.579 kb on + strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.692 kb on + strand at 719.692 kb on + strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.699 kb on + strand at 719.748 kb on + strand at 719.748 kb on + strand at 719.754 kb on + strand at 719.755 kb on - strand at 719.755 kb on - strand at 719.755 kb on - strand at 719.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 717,635 + Sama_0576 0.81 -1.9 717,712 - -1.0 717,763 + -1.2 717,764 - -1.3 717,768 - -0.3 717,787 + -1.0 717,788 - -0.2 717,803 + +0.6 717,833 + +0.1 717,833 + -1.5 717,834 - -1.4 717,846 + +1.4 717,900 + +1.3 717,900 + +0.0 717,900 + -0.7 717,900 + -0.2 717,900 + -0.5 717,900 + +0.8 717,900 + +0.4 717,900 - -1.2 717,900 + -1.5 717,900 + -1.4 717,900 + -2.2 717,900 + -1.8 717,901 - -1.0 717,901 - -0.7 717,901 - +0.8 717,901 - -0.5 717,901 - -0.6 717,901 - -0.5 717,901 - -0.6 717,901 - +0.2 717,901 - +0.1 717,902 + -0.6 717,902 + -0.9 717,946 - -0.2 717,969 + -0.9 717,969 + -0.2 717,970 - -0.2 717,976 + Sama_0577 0.10 -0.7 717,977 - Sama_0577 0.10 -0.6 717,994 + Sama_0577 0.13 -0.7 717,994 + Sama_0577 0.13 +0.1 717,995 - Sama_0577 0.14 +0.4 718,041 + Sama_0577 0.22 -0.1 718,041 + Sama_0577 0.22 -0.9 718,042 - Sama_0577 0.22 -0.2 718,048 + Sama_0577 0.23 -0.6 718,049 - Sama_0577 0.23 +0.1 718,078 + Sama_0577 0.28 -0.4 718,078 + Sama_0577 0.28 -0.5 718,078 + Sama_0577 0.28 -1.0 718,078 + Sama_0577 0.28 -0.7 718,078 + Sama_0577 0.28 +0.3 718,079 - Sama_0577 0.29 -1.3 718,079 - Sama_0577 0.29 -0.7 718,079 - Sama_0577 0.29 -1.4 718,079 - Sama_0577 0.29 -0.8 718,255 + Sama_0577 0.60 +0.6 718,272 + Sama_0577 0.63 -0.9 718,272 + Sama_0577 0.63 -0.5 718,273 - Sama_0577 0.64 -1.0 718,273 - Sama_0577 0.64 -0.2 718,273 - Sama_0577 0.64 -0.9 718,273 - Sama_0577 0.64 -2.5 718,273 - Sama_0577 0.64 +1.1 718,273 - Sama_0577 0.64 -0.7 718,273 - Sama_0577 0.64 -0.4 718,273 - Sama_0577 0.64 -1.7 718,474 + +0.1 718,474 + -0.2 718,474 + -0.7 718,475 - -1.3 718,503 + -1.3 718,503 + -0.7 718,503 + -0.1 718,504 - +0.4 718,504 - +1.1 718,504 - -0.6 718,504 - +0.4 718,504 - -0.4 718,504 - -0.6 718,504 - +0.8 718,504 - +0.0 718,506 + +0.3 718,506 + -1.0 718,506 + +0.2 718,506 + -2.0 718,507 - +0.1 718,507 - -1.6 718,507 - -0.9 718,507 - -1.1 718,507 - -0.4 718,548 + +0.4 718,549 - +0.3 718,571 + -0.2 718,571 + -0.4 718,572 - +0.3 718,572 - -0.6 718,572 - -0.6 718,595 + -1.8 718,621 - +0.3 718,639 + -0.7 718,639 + -0.1 718,640 - +0.1 718,640 - -1.2 718,640 - +0.0 718,640 - +2.4 718,640 - -0.2 718,640 - -1.1 718,640 - -0.2 718,640 - -1.2 718,642 - +0.1 718,699 - Sama_0578 0.13 +1.6 718,740 - Sama_0578 0.17 -0.6 718,830 + Sama_0578 0.24 -0.2 718,830 + Sama_0578 0.24 -0.9 718,830 + Sama_0578 0.24 -0.3 718,830 + Sama_0578 0.24 +0.1 718,830 + Sama_0578 0.24 +0.3 718,831 - Sama_0578 0.25 -2.2 718,831 - Sama_0578 0.25 -0.1 718,831 - Sama_0578 0.25 +1.4 718,831 - Sama_0578 0.25 -1.0 718,831 - Sama_0578 0.25 -0.9 718,831 - Sama_0578 0.25 -0.6 718,952 + Sama_0578 0.35 +0.2 718,953 - Sama_0578 0.35 -0.2 718,953 - Sama_0578 0.35 -0.2 718,953 - Sama_0578 0.35 -0.7 719,038 + Sama_0578 0.42 -0.6 719,038 + Sama_0578 0.42 -0.7 719,038 + Sama_0578 0.42 -0.8 719,039 - Sama_0578 0.42 -0.6 719,039 - Sama_0578 0.42 -0.2 719,042 + Sama_0578 0.43 -1.4 719,068 - Sama_0578 0.45 +0.1 719,168 - Sama_0578 0.54 +0.8 719,173 + Sama_0578 0.54 -0.8 719,173 + Sama_0578 0.54 -0.9 719,174 - Sama_0578 0.54 -0.5 719,174 - Sama_0578 0.54 +0.4 719,174 - Sama_0578 0.54 -0.3 719,174 - Sama_0578 0.54 -1.7 719,175 + Sama_0578 0.54 -2.6 719,175 + Sama_0578 0.54 -0.6 719,175 + Sama_0578 0.54 -0.2 719,175 + Sama_0578 0.54 -1.6 719,176 - Sama_0578 0.54 +0.6 719,176 - Sama_0578 0.54 -0.2 719,201 - Sama_0578 0.56 -0.5 719,222 + Sama_0578 0.58 -0.1 719,222 + Sama_0578 0.58 +1.4 719,223 - Sama_0578 0.58 -0.4 719,223 - Sama_0578 0.58 -0.6 719,223 - Sama_0578 0.58 +0.6 719,223 - Sama_0578 0.58 -1.0 719,276 + Sama_0578 0.63 -1.3 719,277 - Sama_0578 0.63 -0.6 719,367 + Sama_0578 0.71 -0.5 719,368 - Sama_0578 0.71 -0.2 719,368 - Sama_0578 0.71 +0.8 719,418 + Sama_0578 0.75 +1.2 719,418 + Sama_0578 0.75 +0.2 719,419 - Sama_0578 0.75 +0.6 719,437 + Sama_0578 0.77 -0.3 719,437 + Sama_0578 0.77 -0.7 719,474 + Sama_0578 0.80 -0.6 719,490 + Sama_0578 0.81 -0.0 719,491 - Sama_0578 0.82 +0.3 719,491 - Sama_0578 0.82 -0.2 719,569 - Sama_0578 0.88 +0.6 719,579 + Sama_0578 0.89 -1.6 719,579 + Sama_0578 0.89 -0.2 719,580 - Sama_0578 0.89 -0.9 719,580 - Sama_0578 0.89 -0.1 719,580 - Sama_0578 0.89 -1.9 719,580 - Sama_0578 0.89 +2.4 719,692 + -1.0 719,692 + +0.8 719,693 - -0.4 719,693 - +0.2 719,693 - -0.4 719,693 - -1.0 719,693 - -0.9 719,693 - -0.5 719,699 + -0.7 719,748 + -1.2 719,748 + -0.4 719,754 + -0.0 719,755 - +0.3 719,755 - -1.2 719,755 - +0.6 719,847 + -0.7
Or see this region's nucleotide sequence