Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3672 and Shew_3673 are separated by 2 nucleotides Shew_3673 and Shew_3674 are separated by 14 nucleotides Shew_3674 and Shew_3675 are separated by 7 nucleotides
Shew_3672: Shew_3672 - hypothetical protein (RefSeq), at 4,374,251 to 4,375,006
_3672
Shew_3673: Shew_3673 - hypothetical protein (RefSeq), at 4,375,009 to 4,375,548
_3673
Shew_3674: Shew_3674 - cobalt transport protein (RefSeq), at 4,375,563 to 4,376,216
_3674
Shew_3675: Shew_3675 - ABC transporter-related protein (RefSeq), at 4,376,224 to 4,377,588
_3675
Position (kb) 4375
4376
4377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4374.591 kb on - strand, within Shew_3672 at 4374.591 kb on - strand, within Shew_3672 at 4374.639 kb on + strand, within Shew_3672 at 4374.830 kb on + strand, within Shew_3672 at 4375.184 kb on + strand, within Shew_3673 at 4375.189 kb on + strand, within Shew_3673 at 4375.189 kb on + strand, within Shew_3673 at 4375.449 kb on + strand, within Shew_3673 at 4375.675 kb on + strand, within Shew_3674 at 4375.683 kb on - strand, within Shew_3674 at 4376.126 kb on + strand, within Shew_3674 at 4376.126 kb on + strand, within Shew_3674 at 4376.334 kb on - strand at 4376.353 kb on - strand at 4376.489 kb on + strand, within Shew_3675 at 4376.497 kb on - strand, within Shew_3675 at 4376.878 kb on + strand, within Shew_3675 at 4376.942 kb on + strand, within Shew_3675 at 4376.996 kb on - strand, within Shew_3675 at 4377.081 kb on - strand, within Shew_3675
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 4,374,591 - Shew_3672 0.45 -0.4 4,374,591 - Shew_3672 0.45 +0.1 4,374,639 + Shew_3672 0.51 +0.8 4,374,830 + Shew_3672 0.77 +0.2 4,375,184 + Shew_3673 0.32 +0.1 4,375,189 + Shew_3673 0.33 +0.5 4,375,189 + Shew_3673 0.33 +0.2 4,375,449 + Shew_3673 0.81 +1.4 4,375,675 + Shew_3674 0.17 +0.2 4,375,683 - Shew_3674 0.18 +0.0 4,376,126 + Shew_3674 0.86 -0.3 4,376,126 + Shew_3674 0.86 -0.4 4,376,334 - +0.6 4,376,353 - +0.9 4,376,489 + Shew_3675 0.19 -2.8 4,376,497 - Shew_3675 0.20 +0.4 4,376,878 + Shew_3675 0.48 +2.9 4,376,942 + Shew_3675 0.53 -1.0 4,376,996 - Shew_3675 0.57 +0.4 4,377,081 - Shew_3675 0.63 -1.4
Or see this region's nucleotide sequence