Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3593 and Shew_3594 are separated by 153 nucleotides Shew_3594 and Shew_3595 are separated by 91 nucleotides Shew_3595 and Shew_3596 are separated by 112 nucleotides Shew_3596 and Shew_3597 are separated by 156 nucleotides
Shew_3593: Shew_3593 - hypothetical protein (RefSeq), at 4,291,447 to 4,292,172
_3593
Shew_3594: Shew_3594 - hypothetical protein (RefSeq), at 4,292,326 to 4,292,844
_3594
Shew_3595: Shew_3595 - hypothetical protein (RefSeq), at 4,292,936 to 4,293,388
_3595
Shew_3596: Shew_3596 - methyltransferase type 11 (RefSeq), at 4,293,501 to 4,294,226
_3596
Shew_3597: Shew_3597 - inner membrane protein YjeH (RefSeq), at 4,294,383 to 4,295,642
_3597
Position (kb) 4292
4293
4294 Strain fitness (log2 ratio) -2
-1
0
1 at 4292.489 kb on + strand, within Shew_3594 at 4292.607 kb on + strand, within Shew_3594 at 4292.860 kb on + strand at 4292.868 kb on - strand at 4292.914 kb on - strand at 4293.034 kb on + strand, within Shew_3595 at 4293.161 kb on + strand, within Shew_3595 at 4293.161 kb on + strand, within Shew_3595 at 4293.233 kb on - strand, within Shew_3595 at 4293.330 kb on + strand, within Shew_3595 at 4293.338 kb on - strand, within Shew_3595 at 4293.391 kb on - strand at 4293.462 kb on + strand at 4293.646 kb on - strand, within Shew_3596 at 4293.989 kb on + strand, within Shew_3596 at 4294.020 kb on + strand, within Shew_3596
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 4,292,489 + Shew_3594 0.31 -0.1 4,292,607 + Shew_3594 0.54 +0.1 4,292,860 + -0.2 4,292,868 - -0.0 4,292,914 - -0.1 4,293,034 + Shew_3595 0.22 -0.5 4,293,161 + Shew_3595 0.50 -0.5 4,293,161 + Shew_3595 0.50 -2.4 4,293,233 - Shew_3595 0.66 -0.1 4,293,330 + Shew_3595 0.87 -0.6 4,293,338 - Shew_3595 0.89 -0.5 4,293,391 - +1.1 4,293,462 + +0.0 4,293,646 - Shew_3596 0.20 -0.2 4,293,989 + Shew_3596 0.67 -0.0 4,294,020 + Shew_3596 0.71 +0.7
Or see this region's nucleotide sequence