Strain Fitness in Shewanella loihica PV-4 around Shew_3483

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3482 and dut overlap by 4 nucleotidesdut and slmA are separated by 130 nucleotidesslmA and Shew_3485 are separated by 149 nucleotides Shew_3482: Shew_3482 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (RefSeq), at 4,167,530 to 4,168,726 _3482 Shew_3483: dut - deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq), at 4,168,723 to 4,169,181 dut Shew_3484: slmA - nucleoid occlusion protein (RefSeq), at 4,169,312 to 4,169,905 slmA Shew_3485: Shew_3485 - peptidase S9 prolyl oligopeptidase (RefSeq), at 4,170,055 to 4,172,019 _3485 Position (kb) 4168 4169 4170Strain fitness (log2 ratio) -2 -1 0 1at 4168.811 kb on + strand, within dutat 4168.838 kb on + strand, within dutat 4169.174 kb on - strandat 4169.256 kb on + strandat 4169.759 kb on - strand, within slmAat 4169.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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4,168,811 + dut Shew_3483 0.19 -2.0
4,168,838 + dut Shew_3483 0.25 -0.6
4,169,174 - +0.4
4,169,256 + -0.2
4,169,759 - slmA Shew_3484 0.75 -0.8
4,169,867 - -1.4

Or see this region's nucleotide sequence