Strain Fitness in Shewanella loihica PV-4 around Shew_3377

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3375 and Shew_3376 are separated by 60 nucleotidesShew_3376 and Shew_3377 are separated by 6 nucleotidesShew_3377 and Shew_3378 are separated by 3 nucleotidesShew_3378 and Shew_3379 are separated by 111 nucleotides Shew_3375: Shew_3375 - 2-polyprenylphenol 6-hydroxylase (RefSeq), at 4,024,205 to 4,025,854 _3375 Shew_3376: Shew_3376 - twin arginine-targeting protein translocase (RefSeq), at 4,025,915 to 4,026,145 _3376 Shew_3377: Shew_3377 - twin-arginine translocation protein, TatB subunit (RefSeq), at 4,026,152 to 4,026,550 _3377 Shew_3378: Shew_3378 - Sec-independent protein translocase, TatC subunit (RefSeq), at 4,026,554 to 4,027,309 _3378 Shew_3379: Shew_3379 - hypothetical protein (RefSeq), at 4,027,421 to 4,027,960 _3379 Position (kb) 4026 4027Strain fitness (log2 ratio) -2 -1 0 1at 4026.495 kb on - strand, within Shew_3377at 4026.851 kb on + strand, within Shew_3378at 4027.007 kb on + strand, within Shew_3378at 4027.051 kb on - strand, within Shew_3378

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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4,026,495 - Shew_3377 0.86 -2.1
4,026,851 + Shew_3378 0.39 +1.1
4,027,007 + Shew_3378 0.60 -2.1
4,027,051 - Shew_3378 0.66 -0.6

Or see this region's nucleotide sequence