Strain Fitness in Shewanella loihica PV-4 around Shew_3374

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3373 and Shew_3374 are separated by 220 nucleotidesShew_3374 and Shew_3375 overlap by 4 nucleotides Shew_3373: Shew_3373 - ubiquinone/menaquinone biosynthesis methyltransferase (RefSeq), at 4,022,609 to 4,023,364 _3373 Shew_3374: Shew_3374 - hypothetical protein (RefSeq), at 4,023,585 to 4,024,208 _3374 Shew_3375: Shew_3375 - 2-polyprenylphenol 6-hydroxylase (RefSeq), at 4,024,205 to 4,025,854 _3375 Position (kb) 4023 4024 4025Strain fitness (log2 ratio) -3 -2 -1 0 1at 4023.691 kb on + strand, within Shew_3374at 4023.821 kb on + strand, within Shew_3374at 4024.099 kb on + strand, within Shew_3374

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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4,023,691 + Shew_3374 0.17 -1.9
4,023,821 + Shew_3374 0.38 -1.0
4,024,099 + Shew_3374 0.82 -3.3

Or see this region's nucleotide sequence