Strain Fitness in Shewanella loihica PV-4 around Shew_2092
Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cephalothin 0.05 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,419,000 | - | thiH | Shew_2091 | 0.69 | -0.5 |
| 2,419,000 | - | thiH | Shew_2091 | 0.69 | -0.2 |
| 2,419,930 | + | Shew_2092 | 0.75 | +0.6 | |
| 2,420,359 | + | -1.3 | |||
| 2,420,367 | - | -0.8 | |||
| 2,420,726 | + | Shew_2094 | 0.47 | -0.9 | |
| 2,420,810 | + | Shew_2094 | 0.57 | +0.3 | |
| 2,420,918 | + | Shew_2094 | 0.70 | -0.2 | |
| 2,421,046 | - | Shew_2094 | 0.85 | -0.1 |
Or see this region's nucleotide sequence