Strain Fitness in Shewanella loihica PV-4 around Shew_1992

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1990 and Shew_1991 overlap by 4 nucleotidesShew_1991 and Shew_1992 overlap by 4 nucleotidesShew_1992 and Shew_1993 are separated by 55 nucleotidesShew_1993 and Shew_1994 are separated by 94 nucleotides Shew_1990: Shew_1990 - heavy metal translocating P-type ATPase (RefSeq), at 2,301,556 to 2,303,979 _1990 Shew_1991: Shew_1991 - cytochrome oxidase maturation protein, cbb3-type (RefSeq), at 2,303,976 to 2,304,161 _1991 Shew_1992: Shew_1992 - hypothetical protein (RefSeq), at 2,304,158 to 2,304,850 _1992 Shew_1993: Shew_1993 - fumarate/nitrate reduction transcriptional regulator (RefSeq), at 2,304,906 to 2,305,655 _1993 Shew_1994: Shew_1994 - universal stress protein UspE (RefSeq), at 2,305,750 to 2,306,682 _1994 Position (kb) 2304 2305Strain fitness (log2 ratio) -2 -1 0 1at 2303.529 kb on - strand, within Shew_1990at 2304.173 kb on - strandat 2304.475 kb on + strand, within Shew_1992at 2304.475 kb on + strand, within Shew_1992at 2304.488 kb on - strand, within Shew_1992at 2304.944 kb on - strandat 2305.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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2,303,529 - Shew_1990 0.81 -1.6
2,304,173 - +0.2
2,304,475 + Shew_1992 0.46 -0.5
2,304,475 + Shew_1992 0.46 +0.2
2,304,488 - Shew_1992 0.48 -1.9
2,304,944 - -0.8
2,305,645 - +1.1

Or see this region's nucleotide sequence