Strain Fitness in Shewanella loihica PV-4 around Shew_1923

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1922 and Shew_1923 are separated by 158 nucleotidesShew_1923 and Shew_1924 are separated by 319 nucleotides Shew_1922: Shew_1922 - phosphoglucomutase (RefSeq), at 2,218,643 to 2,220,322 _1922 Shew_1923: Shew_1923 - peptide methionine sulfoxide reductase (RefSeq), at 2,220,481 to 2,220,960 _1923 Shew_1924: Shew_1924 - succinylglutamate desuccinylase (RefSeq), at 2,221,280 to 2,222,347 _1924 Position (kb) 2220 2221Strain fitness (log2 ratio) -2 -1 0 1at 2219.490 kb on - strand, within Shew_1922at 2219.772 kb on + strand, within Shew_1922at 2219.848 kb on - strand, within Shew_1922at 2220.388 kb on - strandat 2220.824 kb on + strand, within Shew_1923at 2220.842 kb on - strand, within Shew_1923at 2221.086 kb on + strandat 2221.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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2,219,490 - Shew_1922 0.50 -0.8
2,219,772 + Shew_1922 0.67 -1.9
2,219,848 - Shew_1922 0.72 -0.4
2,220,388 - -1.1
2,220,824 + Shew_1923 0.71 -0.9
2,220,842 - Shew_1923 0.75 -1.0
2,221,086 + -0.1
2,221,235 + +0.4

Or see this region's nucleotide sequence