Strain Fitness in Shewanella loihica PV-4 around Shew_1851

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1850 and Shew_1851 are separated by 163 nucleotidesShew_1851 and Shew_1852 overlap by 4 nucleotides Shew_1850: Shew_1850 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 2,125,619 to 2,127,991 _1850 Shew_1851: Shew_1851 - RND family efflux transporter MFP subunit (RefSeq), at 2,128,155 to 2,129,240 _1851 Shew_1852: Shew_1852 - acriflavin resistance protein (RefSeq), at 2,129,237 to 2,132,365 _1852 Position (kb) 2128 2129 2130Strain fitness (log2 ratio) -1 0 1 2 3at 2127.186 kb on - strand, within Shew_1850at 2127.191 kb on - strand, within Shew_1850at 2127.191 kb on - strand, within Shew_1850at 2127.327 kb on - strand, within Shew_1850at 2127.750 kb on - strand, within Shew_1850at 2127.750 kb on - strand, within Shew_1850at 2127.877 kb on + strandat 2128.571 kb on - strand, within Shew_1851

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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2,127,186 - Shew_1850 0.66 +3.3
2,127,191 - Shew_1850 0.66 -0.9
2,127,191 - Shew_1850 0.66 +0.7
2,127,327 - Shew_1850 0.72 +1.6
2,127,750 - Shew_1850 0.90 +0.2
2,127,750 - Shew_1850 0.90 -0.7
2,127,877 + -0.1
2,128,571 - Shew_1851 0.38 -0.6

Or see this region's nucleotide sequence