Strain Fitness in Shewanella loihica PV-4 around Shew_1815

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1814 and Shew_1815 are separated by 24 nucleotidesShew_1815 and Shew_1816 are separated by 185 nucleotidesShew_1816 and Shew_1817 are separated by 58 nucleotides Shew_1814: Shew_1814 - ABC transporter ATPase component (RefSeq), at 2,085,401 to 2,087,320 _1814 Shew_1815: Shew_1815 - hypothetical protein (RefSeq), at 2,087,345 to 2,089,198 _1815 Shew_1816: Shew_1816 - ribosome modulation factor (RefSeq), at 2,089,384 to 2,089,560 _1816 Shew_1817: Shew_1817 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase (RefSeq), at 2,089,619 to 2,090,134 _1817 Position (kb) 2087 2088 2089 2090Strain fitness (log2 ratio) -3 -2 -1 0 1at 2088.826 kb on + strand, within Shew_1815at 2088.920 kb on + strand, within Shew_1815at 2089.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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2,088,826 + Shew_1815 0.80 -2.8
2,088,920 + Shew_1815 0.85 -0.8
2,089,380 - -0.1

Or see this region's nucleotide sequence