Strain Fitness in Shewanella loihica PV-4 around Shew_1682

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1681 and Shew_1682 are separated by 42 nucleotidesShew_1682 and Shew_1683 are separated by 30 nucleotidesShew_1683 and Shew_1684 are separated by 31 nucleotides Shew_1681: Shew_1681 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,931,402 to 1,932,892 _1681 Shew_1682: Shew_1682 - ribonuclease H (RefSeq), at 1,932,935 to 1,933,699 _1682 Shew_1683: Shew_1683 - hypothetical protein (RefSeq), at 1,933,730 to 1,934,305 _1683 Shew_1684: Shew_1684 - lysine exporter protein LysE/YggA (RefSeq), at 1,934,337 to 1,934,933 _1684 Position (kb) 1932 1933 1934Strain fitness (log2 ratio) -1 0 1at 1932.603 kb on - strand, within Shew_1681at 1933.016 kb on + strand, within Shew_1682at 1933.258 kb on + strand, within Shew_1682at 1933.929 kb on - strand, within Shew_1683at 1934.472 kb on + strand, within Shew_1684at 1934.480 kb on - strand, within Shew_1684at 1934.480 kb on - strand, within Shew_1684at 1934.693 kb on + strand, within Shew_1684

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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1,932,603 - Shew_1681 0.81 +1.2
1,933,016 + Shew_1682 0.11 -1.2
1,933,258 + Shew_1682 0.42 -1.0
1,933,929 - Shew_1683 0.35 +0.4
1,934,472 + Shew_1684 0.23 +1.0
1,934,480 - Shew_1684 0.24 -0.1
1,934,480 - Shew_1684 0.24 +0.3
1,934,693 + Shew_1684 0.60 -1.4

Or see this region's nucleotide sequence