Strain Fitness in Shewanella loihica PV-4 around Shew_1625

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysB and Shew_1625 are separated by 92 nucleotidesShew_1625 and Shew_1626 are separated by 370 nucleotides Shew_1624: cysB - transcriptional regulator CysB (RefSeq), at 1,856,663 to 1,857,637 cysB Shew_1625: Shew_1625 - L-serine dehydratase 1 (RefSeq), at 1,857,730 to 1,859,106 _1625 Shew_1626: Shew_1626 - beta-hexosaminidase (RefSeq), at 1,859,477 to 1,860,478 _1626 Position (kb) 1857 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1at 1858.868 kb on + strand, within Shew_1625at 1859.057 kb on - strandat 1859.207 kb on + strandat 1860.034 kb on - strand, within Shew_1626

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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1,858,868 + Shew_1625 0.83 -3.7
1,859,057 - -3.4
1,859,207 + -2.1
1,860,034 - Shew_1626 0.56 -0.4

Or see this region's nucleotide sequence