Strain Fitness in Shewanella loihica PV-4 around Shew_1559

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1558 and Shew_1559 are separated by 32 nucleotidesShew_1559 and trmU are separated by 3 nucleotides Shew_1558: Shew_1558 - adenylosuccinate lyase (RefSeq), at 1,788,546 to 1,789,916 _1558 Shew_1559: Shew_1559 - hypothetical protein (RefSeq), at 1,789,949 to 1,790,566 _1559 Shew_1560: trmU - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 1,790,570 to 1,791,685 trmU Position (kb) 1789 1790 1791Strain fitness (log2 ratio) -1 0 1at 1790.218 kb on - strand, within Shew_1559

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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1,790,218 - Shew_1559 0.44 -1.6

Or see this region's nucleotide sequence