Strain Fitness in Shewanella loihica PV-4 around Shew_1465

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadE and Shew_1465 are separated by 143 nucleotidesShew_1465 and Shew_1466 are separated by 113 nucleotides Shew_1464: nadE - NAD synthetase (RefSeq), at 1,686,260 to 1,687,126 nadE Shew_1465: Shew_1465 - hypothetical protein (RefSeq), at 1,687,270 to 1,687,776 _1465 Shew_1466: Shew_1466 - hypothetical protein (RefSeq), at 1,687,890 to 1,689,467 _1466 Position (kb) 1687 1688Strain fitness (log2 ratio) -1 0 1at 1687.512 kb on + strand, within Shew_1465at 1688.045 kb on + strandat 1688.289 kb on + strand, within Shew_1466at 1688.367 kb on + strand, within Shew_1466at 1688.375 kb on - strand, within Shew_1466

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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1,687,512 + Shew_1465 0.48 -1.4
1,688,045 + +0.0
1,688,289 + Shew_1466 0.25 -0.2
1,688,367 + Shew_1466 0.30 -0.3
1,688,375 - Shew_1466 0.31 -0.4

Or see this region's nucleotide sequence