Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0806 and Shew_0807 are separated by 748 nucleotides Shew_0807 and Shew_0808 are separated by 305 nucleotides
Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229
_0806
Shew_0807: Shew_0807 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 919,978 to 925,095
_0807
Shew_0808: Shew_0808 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 925,401 to 927,065
_0808
Position (kb) 919
920
921
922
923
924
925
926 Strain fitness (log2 ratio) -1
0
1 at 918.985 kb on + strand, within Shew_0806 at 919.075 kb on + strand, within Shew_0806 at 919.083 kb on + strand, within Shew_0806 at 919.230 kb on - strand at 919.355 kb on - strand at 919.620 kb on + strand at 919.966 kb on + strand at 920.029 kb on + strand at 920.140 kb on - strand at 920.140 kb on - strand at 920.312 kb on + strand at 920.422 kb on - strand at 920.574 kb on + strand, within Shew_0807 at 920.585 kb on + strand, within Shew_0807 at 920.585 kb on + strand, within Shew_0807 at 920.585 kb on + strand, within Shew_0807 at 921.035 kb on + strand, within Shew_0807 at 921.038 kb on + strand, within Shew_0807 at 921.507 kb on + strand, within Shew_0807 at 921.537 kb on - strand, within Shew_0807 at 921.722 kb on + strand, within Shew_0807 at 921.753 kb on + strand, within Shew_0807 at 921.911 kb on + strand, within Shew_0807 at 921.911 kb on + strand, within Shew_0807 at 921.919 kb on - strand, within Shew_0807 at 922.274 kb on - strand, within Shew_0807 at 922.519 kb on - strand, within Shew_0807 at 922.666 kb on - strand, within Shew_0807 at 922.748 kb on - strand, within Shew_0807 at 923.037 kb on - strand, within Shew_0807 at 923.137 kb on + strand, within Shew_0807 at 923.145 kb on - strand, within Shew_0807 at 923.313 kb on + strand, within Shew_0807 at 923.375 kb on + strand, within Shew_0807 at 923.488 kb on + strand, within Shew_0807 at 923.661 kb on + strand, within Shew_0807 at 923.960 kb on - strand, within Shew_0807 at 923.960 kb on - strand, within Shew_0807 at 924.436 kb on + strand, within Shew_0807 at 924.466 kb on - strand, within Shew_0807 at 924.550 kb on - strand, within Shew_0807 at 924.601 kb on + strand at 924.601 kb on + strand at 924.893 kb on + strand at 924.981 kb on + strand at 925.094 kb on + strand at 925.102 kb on - strand at 925.102 kb on - strand at 925.541 kb on + strand at 925.565 kb on + strand at 925.573 kb on - strand, within Shew_0808 at 925.971 kb on - strand, within Shew_0808
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 918,985 + Shew_0806 0.71 +0.8 919,075 + Shew_0806 0.82 +1.7 919,083 + Shew_0806 0.83 +0.1 919,230 - +0.7 919,355 - -0.3 919,620 + -0.3 919,966 + +0.6 920,029 + +0.3 920,140 - -0.9 920,140 - -0.8 920,312 + +0.2 920,422 - +0.7 920,574 + Shew_0807 0.12 +0.1 920,585 + Shew_0807 0.12 +0.4 920,585 + Shew_0807 0.12 -0.1 920,585 + Shew_0807 0.12 +0.9 921,035 + Shew_0807 0.21 +0.9 921,038 + Shew_0807 0.21 +1.2 921,507 + Shew_0807 0.30 +0.2 921,537 - Shew_0807 0.30 -0.1 921,722 + Shew_0807 0.34 +0.3 921,753 + Shew_0807 0.35 +0.2 921,911 + Shew_0807 0.38 +0.8 921,911 + Shew_0807 0.38 +0.2 921,919 - Shew_0807 0.38 -0.3 922,274 - Shew_0807 0.45 +0.4 922,519 - Shew_0807 0.50 +0.2 922,666 - Shew_0807 0.53 +0.2 922,748 - Shew_0807 0.54 -0.7 923,037 - Shew_0807 0.60 -0.3 923,137 + Shew_0807 0.62 -0.0 923,145 - Shew_0807 0.62 +0.3 923,313 + Shew_0807 0.65 +0.0 923,375 + Shew_0807 0.66 -0.3 923,488 + Shew_0807 0.69 +0.6 923,661 + Shew_0807 0.72 +0.3 923,960 - Shew_0807 0.78 +0.9 923,960 - Shew_0807 0.78 -0.1 924,436 + Shew_0807 0.87 +0.2 924,466 - Shew_0807 0.88 -0.7 924,550 - Shew_0807 0.89 +0.3 924,601 + -0.0 924,601 + -0.0 924,893 + +0.0 924,981 + -0.3 925,094 + +0.5 925,102 - -0.3 925,102 - +0.6 925,541 + -0.4 925,565 + +0.5 925,573 - Shew_0808 0.10 -1.0 925,971 - Shew_0808 0.34 +0.1
Or see this region's nucleotide sequence