Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0791 and Shew_0792 are separated by 197 nucleotides Shew_0792 and Shew_0793 are separated by 176 nucleotides
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Shew_0792: Shew_0792 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 904,370 to 904,939
_0792
Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681
_0793
Position (kb) 904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 903.381 kb on - strand at 903.522 kb on - strand, within Shew_0791 at 903.526 kb on + strand, within Shew_0791 at 903.550 kb on + strand, within Shew_0791 at 903.568 kb on - strand, within Shew_0791 at 903.669 kb on - strand, within Shew_0791 at 903.917 kb on + strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 904.523 kb on - strand, within Shew_0792 at 904.561 kb on + strand, within Shew_0792 at 904.569 kb on - strand, within Shew_0792 at 904.722 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.817 kb on - strand, within Shew_0792 at 904.877 kb on + strand, within Shew_0792 at 904.878 kb on + strand, within Shew_0792 at 904.892 kb on + strand at 904.892 kb on + strand at 905.437 kb on + strand, within Shew_0793 at 905.512 kb on - strand, within Shew_0793 at 905.622 kb on + strand, within Shew_0793 at 905.664 kb on + strand, within Shew_0793 at 905.849 kb on - strand, within Shew_0793
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 903,381 - +0.2 903,522 - Shew_0791 0.12 -0.1 903,526 + Shew_0791 0.13 +0.2 903,550 + Shew_0791 0.16 +0.4 903,568 - Shew_0791 0.19 +0.6 903,669 - Shew_0791 0.32 -0.6 903,917 + Shew_0791 0.66 +2.8 903,925 - Shew_0791 0.67 +1.3 903,925 - Shew_0791 0.67 -0.5 903,925 - Shew_0791 0.67 +0.6 903,925 - Shew_0791 0.67 +0.1 903,925 - Shew_0791 0.67 +0.1 904,523 - Shew_0792 0.27 -2.7 904,561 + Shew_0792 0.34 -1.0 904,569 - Shew_0792 0.35 -4.4 904,722 + Shew_0792 0.62 -2.2 904,809 + Shew_0792 0.77 -2.3 904,809 + Shew_0792 0.77 -0.1 904,817 - Shew_0792 0.78 -3.1 904,877 + Shew_0792 0.89 -2.7 904,878 + Shew_0792 0.89 -2.3 904,892 + -3.1 904,892 + -2.2 905,437 + Shew_0793 0.20 +0.9 905,512 - Shew_0793 0.25 -0.9 905,622 + Shew_0793 0.32 -1.7 905,664 + Shew_0793 0.35 -0.5 905,849 - Shew_0793 0.47 -0.4
Or see this region's nucleotide sequence