Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0747 and Shew_0748 are separated by 121 nucleotides Shew_0748 and Shew_0749 are separated by 71 nucleotides Shew_0749 and Shew_0750 are separated by 62 nucleotides Shew_0750 and Shew_0751 are separated by 69 nucleotides
Shew_0747: Shew_0747 - GGDEF domain-containing protein (RefSeq), at 847,984 to 848,940
_0747
Shew_0748: Shew_0748 - acetyltransferase (RefSeq), at 849,062 to 849,622
_0748
Shew_0749: Shew_0749 - hypothetical protein (RefSeq), at 849,694 to 850,038
_0749
Shew_0750: Shew_0750 - hypothetical protein (RefSeq), at 850,101 to 850,538
_0750
Shew_0751: Shew_0751 - S-adenosylmethionine synthetase (RefSeq), at 850,608 to 851,759
_0751
Position (kb) 849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 848.310 kb on + strand, within Shew_0747 at 848.465 kb on - strand, within Shew_0747 at 848.569 kb on + strand, within Shew_0747 at 848.577 kb on - strand, within Shew_0747 at 848.681 kb on + strand, within Shew_0747 at 848.731 kb on + strand, within Shew_0747 at 848.946 kb on + strand at 849.039 kb on + strand at 849.141 kb on + strand, within Shew_0748 at 849.330 kb on - strand, within Shew_0748 at 849.404 kb on - strand, within Shew_0748 at 849.417 kb on + strand, within Shew_0748 at 849.417 kb on + strand, within Shew_0748 at 849.543 kb on - strand, within Shew_0748 at 849.617 kb on + strand at 849.775 kb on - strand, within Shew_0749 at 849.838 kb on - strand, within Shew_0749 at 850.103 kb on + strand at 850.111 kb on + strand at 850.119 kb on - strand at 850.189 kb on - strand, within Shew_0750 at 850.431 kb on + strand, within Shew_0750
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 848,310 + Shew_0747 0.34 +0.5 848,465 - Shew_0747 0.50 -0.8 848,569 + Shew_0747 0.61 -0.1 848,577 - Shew_0747 0.62 +0.8 848,681 + Shew_0747 0.73 +0.5 848,731 + Shew_0747 0.78 +0.1 848,946 + -0.0 849,039 + -0.4 849,141 + Shew_0748 0.14 -0.9 849,330 - Shew_0748 0.48 -3.0 849,404 - Shew_0748 0.61 -0.5 849,417 + Shew_0748 0.63 -1.0 849,417 + Shew_0748 0.63 -2.0 849,543 - Shew_0748 0.86 -0.9 849,617 + +0.0 849,775 - Shew_0749 0.23 -0.0 849,838 - Shew_0749 0.42 +0.1 850,103 + +0.1 850,111 + +0.1 850,119 - +0.7 850,189 - Shew_0750 0.20 -0.2 850,431 + Shew_0750 0.75 +0.3
Or see this region's nucleotide sequence