Strain Fitness in Shewanella loihica PV-4 around Shew_0550

Experiment: Cephalothin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0549 and Shew_0550 are separated by 47 nucleotidesShew_0550 and Shew_0551 overlap by 4 nucleotides Shew_0549: Shew_0549 - DNA topoisomerase IV subunit B (RefSeq), at 618,825 to 620,711 _0549 Shew_0550: Shew_0550 - L-sorbosone dehydrogenase, putative (RefSeq), at 620,759 to 621,925 _0550 Shew_0551: Shew_0551 - DNA topoisomerase IV subunit A (RefSeq), at 621,922 to 624,189 _0551 Position (kb) 620 621 622Strain fitness (log2 ratio) -2 -1 0 1at 621.178 kb on + strand, within Shew_0550

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml
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621,178 + Shew_0550 0.36 -1.8

Or see this region's nucleotide sequence