Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0416 and Shew_0417 are separated by 168 nucleotides Shew_0417 and Shew_0418 are separated by 3 nucleotides
Shew_0416: Shew_0416 - peptidase U62, modulator of DNA gyrase (RefSeq), at 469,898 to 471,238
_0416
Shew_0417: Shew_0417 - ArsR family transcriptional regulator (RefSeq), at 471,407 to 471,754
_0417
Shew_0418: Shew_0418 - arsenical-resistance protein (RefSeq), at 471,758 to 472,792
_0418
Position (kb) 471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 470.773 kb on + strand, within Shew_0416 at 470.900 kb on - strand, within Shew_0416 at 470.983 kb on + strand, within Shew_0416 at 470.996 kb on - strand, within Shew_0416 at 471.091 kb on + strand, within Shew_0416 at 471.091 kb on + strand, within Shew_0416 at 471.099 kb on - strand, within Shew_0416 at 471.104 kb on + strand, within Shew_0416 at 471.314 kb on - strand at 471.431 kb on - strand at 471.437 kb on + strand at 471.466 kb on + strand, within Shew_0417 at 471.623 kb on - strand, within Shew_0417 at 471.677 kb on - strand, within Shew_0417 at 472.188 kb on + strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.280 kb on + strand, within Shew_0418 at 472.288 kb on - strand, within Shew_0418 at 472.292 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.413 kb on - strand, within Shew_0418 at 472.416 kb on + strand, within Shew_0418 at 472.435 kb on + strand, within Shew_0418 at 472.473 kb on - strand, within Shew_0418 at 472.595 kb on + strand, within Shew_0418 at 472.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 470,773 + Shew_0416 0.65 +0.6 470,900 - Shew_0416 0.75 -2.1 470,983 + Shew_0416 0.81 +0.1 470,996 - Shew_0416 0.82 +0.1 471,091 + Shew_0416 0.89 -0.0 471,091 + Shew_0416 0.89 +0.3 471,099 - Shew_0416 0.90 -0.1 471,104 + Shew_0416 0.90 -0.2 471,314 - +0.5 471,431 - -1.3 471,437 + -0.1 471,466 + Shew_0417 0.17 -0.5 471,623 - Shew_0417 0.62 -1.5 471,677 - Shew_0417 0.78 -0.6 472,188 + Shew_0418 0.42 +1.7 472,196 - Shew_0418 0.42 -0.3 472,196 - Shew_0418 0.42 -0.1 472,280 + Shew_0418 0.50 -2.3 472,288 - Shew_0418 0.51 +0.1 472,292 + Shew_0418 0.52 -0.1 472,314 + Shew_0418 0.54 -0.8 472,314 + Shew_0418 0.54 -1.1 472,405 + Shew_0418 0.63 +0.2 472,405 + Shew_0418 0.63 +0.1 472,413 - Shew_0418 0.63 +0.3 472,416 + Shew_0418 0.64 -0.4 472,435 + Shew_0418 0.65 -3.4 472,473 - Shew_0418 0.69 +1.1 472,595 + Shew_0418 0.81 +0.1 472,690 - +0.4
Or see this region's nucleotide sequence