Experiment: Cephalothin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0124 and Shew_0125 are separated by 9 nucleotides Shew_0125 and Shew_0126 are separated by 398 nucleotides Shew_0126 and Shew_0127 overlap by 4 nucleotides
Shew_0124: Shew_0124 - cytochrome-c oxidase (RefSeq), at 133,433 to 135,043
_0124
Shew_0125: Shew_0125 - cytochrome c oxidase, subunit II (RefSeq), at 135,053 to 136,618
_0125
Shew_0126: Shew_0126 - hypothetical protein (RefSeq), at 137,017 to 137,526
_0126
Shew_0127: Shew_0127 - LexA repressor (RefSeq), at 137,523 to 138,140
_0127
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1 at 134.117 kb on - strand, within Shew_0124 at 134.408 kb on - strand, within Shew_0124 at 134.519 kb on - strand, within Shew_0124 at 134.519 kb on - strand, within Shew_0124 at 134.867 kb on - strand, within Shew_0124 at 134.993 kb on - strand at 135.104 kb on - strand at 135.176 kb on - strand at 135.194 kb on - strand at 135.194 kb on - strand at 135.368 kb on + strand, within Shew_0125 at 135.810 kb on + strand, within Shew_0125 at 135.818 kb on - strand, within Shew_0125 at 135.989 kb on + strand, within Shew_0125 at 136.060 kb on + strand, within Shew_0125 at 136.142 kb on + strand, within Shew_0125 at 136.164 kb on + strand, within Shew_0125 at 136.197 kb on + strand, within Shew_0125 at 136.373 kb on - strand, within Shew_0125 at 136.407 kb on + strand, within Shew_0125 at 136.447 kb on + strand, within Shew_0125 at 136.668 kb on - strand at 137.151 kb on + strand, within Shew_0126 at 137.379 kb on + strand, within Shew_0126 at 137.415 kb on + strand, within Shew_0126 at 137.423 kb on - strand, within Shew_0126 at 137.551 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.05 mg/ml remove 134,117 - Shew_0124 0.42 -0.0 134,408 - Shew_0124 0.61 -0.1 134,519 - Shew_0124 0.67 -0.2 134,519 - Shew_0124 0.67 +0.1 134,867 - Shew_0124 0.89 -0.2 134,993 - +0.2 135,104 - +0.1 135,176 - +0.2 135,194 - -0.3 135,194 - +0.2 135,368 + Shew_0125 0.20 -1.6 135,810 + Shew_0125 0.48 -0.4 135,818 - Shew_0125 0.49 -0.0 135,989 + Shew_0125 0.60 -0.1 136,060 + Shew_0125 0.64 +0.1 136,142 + Shew_0125 0.70 +0.5 136,164 + Shew_0125 0.71 -0.1 136,197 + Shew_0125 0.73 -0.8 136,373 - Shew_0125 0.84 -0.3 136,407 + Shew_0125 0.86 -0.3 136,447 + Shew_0125 0.89 +1.3 136,668 - -0.9 137,151 + Shew_0126 0.26 -0.5 137,379 + Shew_0126 0.71 -0.3 137,415 + Shew_0126 0.78 -1.1 137,423 - Shew_0126 0.80 +0.5 137,551 + +0.7
Or see this region's nucleotide sequence