Strain Fitness in Shewanella loihica PV-4 around Shew_0080

Experiment: Cephalothin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.05 mg/ml
92,632	+		Shew_0079	0.53	-0.1
92,816	-		Shew_0079	0.66	+0.5
92,816	-		Shew_0079	0.66	-0.3
92,870	+		Shew_0079	0.70	+0.1
92,944	-		Shew_0079	0.75	+0.4
92,950	+		Shew_0079	0.75	+0.1
92,960	+		Shew_0079	0.76	-1.6
92,968	-		Shew_0079	0.76	-0.5
92,968	-		Shew_0079	0.76	+0.1
93,149	-		Shew_0079	0.89	+0.5
93,373	+				+0.1
93,477	+				-0.4
93,510	-				-0.6
93,537	+				-0.1
93,545	-				+0.1
93,545	-				-1.5
93,555	-				-1.5
93,555	-				-0.1
93,589	-				+0.5
93,589	-				-0.1
93,597	+				-0.8
93,641	-				-0.9
93,681	+				-1.1
93,681	+				-0.5
93,681	+				+0.3
93,681	+				-0.5
93,681	+				+0.1
93,681	+				-1.3
93,689	-				-1.0
93,689	-				-2.3
93,689	-				-0.2
93,825	+		Shew_0080	0.19	-0.3
93,955	-		Shew_0080	0.29	+0.5
94,003	-		Shew_0080	0.33	+0.0
94,014	-		Shew_0080	0.34	-0.2
94,054	+		Shew_0080	0.37	-0.4
94,145	-		Shew_0080	0.44	-3.7
94,160	+		Shew_0080	0.45	-1.1
94,168	-		Shew_0080	0.46	-1.0
94,283	-		Shew_0080	0.55	-0.9
94,517	-		Shew_0080	0.73	-2.8
94,517	-		Shew_0080	0.73	-1.6
94,694	+		Shew_0080	0.87	-1.4
94,785	+				+0.7
94,802	-				-0.4
94,843	-				-0.5
95,002	+		Shew_0081	0.18	+0.2
95,439	+		Shew_0081	0.77	+0.4